Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC699443P7
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr2:84821463-84822506  UCSC
Strand -
Parental Sequence XM_015115178.2
Parental seq. overlap 685 bp
Parental seq. overlap (%) 60.9%
Genomic Region Intergenic
Retrocopy Summary LOC699443P7, located on chr2:84821463-84822506, is a retrocopy of the parental gene H3-3A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name H3-3A
Full Name H3.3 histone A
Also known as H3F3A|H3F3B
Coordinate chr1:83596437-83606297
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens H3P13
Chimpanzee Pan troglodytes HIST1H3AP7
Bonobo Pan paniscus LOC100970414P5
Gorilla Gorilla gorilla LOC101132116P4
Orangutan Pongo abelii LOC100433071P6
Gibbon Nomascus leucogenys LOC100599068P17
Green monkey Chlorocebus sabaeus LOC103232061P15
Crab-eating macaque Macaca fascicularis H3F3AP11
Golden snub-nosed monkey Rhinopithecus roxellana LOC104677083P1
Marmoset Callithrix jacchus LOC100406796P31
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC699443P7
ACTGTGGCACTCGGTGAAATTAGACGTTATCAGAAGTCCTCTGAACTTCTGATTCGCAAACTTCCCTTCCAGTGTCTGGTGCGAGAAATTGCTCAGGACTTTAAAACAGATATGCACTTCCAGAGTGCAGCTGTTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCGTGCGGAACATGTAACAATTATGCCGAAAGACATCCAGCTAACACACCACGTACGTGGAAAATGTGCTTAAGAATCCACTATgTCCACTATGATGGGAAACACTTTATTCTGAAAAAAAAAACAAACACACACAAAAAATTCTCTTCCTCCTATTATTGGTAGTTCTGAACATTAGATTTTTTTTTTCCATGGGGTTAAAAGGTACCTAAGTACATATGATTGCGAGTGGAAAAGGGGACAGAAATCAGGTATTGGCAGTTTTTCCATTTTCATTTGTGTGTGAATTTTTAATATAAATGCGGGGACATAAAGCATTAATGCGAGTCAAAATGTTTCAGTGAACAAGTTTCAGCAGTGCAACTTTATAATAATTTTAATAAACCTGTTAAATTTTTGTGATAATGCCTGCATTTGGATTTTTTTAAAACAACTAAATTTCTTATTGACAGCAACTAAATGGTGTTCGTAGCATTTTTATCATACAGTAGATTCCGTTCATTCACTATACTTTCTGAGTTGTCCTACATGCAAGTACATTTTTTG
>XM_015115178.2
CGGCGCGGGGGCGGGGCGGCGTGTGTTGGGGGATAGCCTCGGTGTCAGCCATCTTTCAATTGTGTTcgcagccgccgccgcgccgccgtcgctctctaacgccagcgccgcctctcgctcgccgAGCTACAGCCGAAGGAGAAGGGGGGTAAGTAAGGAGGTCTCTGTACCATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCACTCCGTGAAATTAGACGTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAAACAGATCTGCGCTTCCAGAGCGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAGAACGTGCTTAAGAATCCACTATGATGGGAAACATTTCATTCTCaaaaaaaaaaaaaaaaaaaaTTCTCTTCTTCCTGTTATTGGTAGTTCTGAACGTTAGATATTTTTTTTCCATGGGGTCAAAAGGTACCTAAGTATATGATTGCGAGTGGAAAAATAGGGGACAGAAATCAGGTATTGGCAGTTTTTCCATTTTCATTTGTGTGTGAATTTTTAATATAAATGCAGAGGCGTAAAGCATTAATGCAAGTTAAAATGTTTCAGTGAACAAGTTTCAGCGGTTCAACTTTATAATAATTATAAATAAACCTGTTAAATTTTTCTGGACAATGCCAGCATTTGGATTTTTTTAAAACAAGTAAATTTCTTATTGACGGCAACTAAATGGTGTTTGTAGCATTTTTATCATACAGTAGATTCCATCCATTCACTATACTTTTCTAACTGAGTTGTCCTACATGCAAGTACATGTTTTTAATGTTGTCTGTCTTCTGTGCTGTTCCTGTAAGTTTGCTATTAAAATACATTAAACTATA

Publications

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