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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC703365P16
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr5:57322232-57322608  UCSC
Strand -
Parental Sequence XM_015127816.1
Parental seq. overlap 327 bp
Parental seq. overlap (%) 54.7%
Genomic Region Intragenic (CCDC158)
Retrocopy Summary LOC703365P16, located on chr5:57322232-57322608, is a retrocopy of the parental gene LOC703365. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC703365
Full Name N/A
Also known as -
Coordinate chrX:98204734-98209821
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL36AP60
Chimpanzee Pan troglodytes RPL36AP8
Bonobo Pan paniscus LOC100993427P9
Gorilla Gorilla gorilla LOC101135216P7
Orangutan Pongo abelii RPL36AP11
Gibbon Nomascus leucogenys LOC100595785P18
Green monkey Chlorocebus sabaeus LOC103241865P1
Crab-eating macaque Macaca fascicularis LOC102125097P16
Baboon Papio anubis LOC101006882P5
Golden snub-nosed monkey Rhinopithecus roxellana LOC104659583P5
Marmoset Callithrix jacchus LOC100407306P6
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC703365P16
CAAGCATGGTAAATGTTCCTAAAACCCACAGACTTTCTGTAAAAAGTGTGACAAGCACCAACTCCACAAAACAACACAGTACAAGAAGGGCAAGGATTTTCTGTATGCCCAGAGAAAGCCTCATGATGACAGGAAGCAGAGTGGCTATGGTGGGCAGACTAAGTCGATTTTCTGGAAAAAGACTAAAACGATCAAGAAGATTGTGCTGATGCCTTGAGTGCATTGAACCCAGCTGCAGATCTAAGAGAATGCTGGCAACCAAGAGATGCAAGCCTCTTGAACTGGCTTGAGATATGAAGAGAAAGGGTGAAGCGATCCAGTTCTCAGTGTCATCTTTTGTTTTATTATGAAGACAATAAAATCTTGAGTTTATGTTA
>XM_015127816.1
GTTGGGGTGAGTGGACCACCCTTTAGGCGGAGTCCTTCCTTAAGCTCCCGCCCGCGGCTCGGAACTGAGTCCTCTCAGCAGCCGGAGGGCGCTGCGCCGAGCCTTACACTCTATGATTGCTCCTACCGACTCCCATGAGGAAGTGCGATCGGGAACCTCCTATATACTTCCGTTTGCGGCGCGGCTTCTTTCTTTCTTCCCGTGCCGGTATCGCTCTCGCAAGCATGGTTAACGTCCCTAAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCAACCCCACAAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTGTATGCCCAGGGAAAGCGGCGTTATGACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCCGATTTTCCGGAAAAAGGCTAAAACTACAAAGAAGATTGTGCTAAGGCTTGAGTGCGTTGAGCCCAACTGCAGATCTAAGAGAATGCTGGCTATTAAAAGATGCAAGCATTTTGAACTGGGAGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAGTGTCATCTTTTATTATGAAGACAATAAAATCTTGAGTTTATGTTCA

Publications

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