Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name LOC709981P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr3:155348004-155348305  UCSC
Strand -
Parental Sequence XM_015128063.2
Parental seq. overlap 255 bp
Parental seq. overlap (%) 13.9%
Genomic Region Intergenic
Retrocopy Summary LOC709981P1, located on chr3:155348004-155348305, is a retrocopy of the parental gene LOC709981. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC709981
Full Name N/A
Also known as -
Coordinate chr1:1789011-1809640
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF730P1
Chimpanzee Pan troglodytes LOC736971P1
Bonobo Pan paniscus LOC100975640P1
Gorilla Gorilla gorilla LOC101124778P1
Orangutan Pongo abelii LOC100432935P1
Gibbon Nomascus leucogenys LOC101177182P1
Green monkey Chlorocebus sabaeus LOC103230923P1
Crab-eating macaque Macaca fascicularis LOC102144076P1
Baboon Papio anubis LOC101010061P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104681121P1
Marmoset Callithrix jacchus LOC100391917P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC709981P1
GGACACCCTAGAAGCTGGCAAGTGAGTCTGTTGACATTCAGGGATGTGGCTGTATTTTCTCCAGAGGAGTGGGGATGCCTGGACCCTGCACAGCAGAATTTGTATAGGGATGTGATGTTAAACAACTACAGAAACCTGGCCTCCCTGGGTTTTGCTATATCTAAGCCAGACGTGATCACCTGCCTGGAGCAAAGGAAAGAGCCCTGGAATATGAAGAGACAGGAGACAGAAGCCAAACACCAGTTATGTCTTCTCATTTCACACAAGGCCTTTTGCCAGAGCAGGGCATAAAAGATTCATTC
>XM_015128063.2
TCTGGCGGGGCCTTCGTCTCTCTCTTTGCAGCACTACTGGGTCTTCTGTGCTCGGCGTGCTCGGCGCTGGGAAGCCCGGGTGGCCGCCACAGCCTCTTGCCCTTTGACCTGCAAGTATCAGGAGATCCATAGCCAAGAAGCCTGGACACCCGGGAAGCTGGGAAATGGGACTGTTGATATTCAGGGATGTGGCCATAGAATTCTCTCCGGAGGAGTGGAGCTATCTGGACCCGGCTCAGCAGAATCTGTATAGGGACGTGATGTTAGAAAACTACAGAAACCTGGTCTCTCTGGGTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTAGAGCAAAGGAATGAGCCGTGGAATGTGAAGAAACATGAGACAATAGGCAGACACCCAGCTGTTTCTTCTCATTTCACCCAAGACCTCTTGCCAGAGCATGGTATAAAAGATTCATTTCAAAAAGTGATACTGGGAAGATATGGAAGCTGTGGCACTGAGAATTTAGACTTAAAGAAAGATTGGGAAAGGGTGGGTGAATCTAAGGTGCAGAAAGAATGTTATAATGGACTTAACCAATCTTTATCAACTACCCATACCAAAATCTTTCAATTTAATAAATGCATGAACGTCTTTAGTAAACCGTCAAATCTAAATAGACAGAAGATAAGACATACTGGAGAGAGATCTTCCAACTGTAAAGAATGTGACAGTTCCTTTTACATATCCTCAATTCTAACTCCACTTCAGAGAATCCACACTGCAGAGAAATCCTACAAGTGTAGACAATGTGGGGAAGCCTTCAAGCACTGCTCATGCTTTATTGAACATAAGACAGTTCATAATGAAGAGAAACATTTCAAATGTAAAGAATGTGGCAAAGTCTTTAAATCCTTCACAAACCTTTCTAATCACATTATAATTCATACTGGAGAGAAACTCTATAAATGTGAAGAATGTGGCAAAGCTTTTAACCACAGTTCAAACCATGCCAAACATAAGAAAATTCACACTGGAGAGAAACCCCATAAATGTGAAGAATGTGGCAAAGCCTTTAACTGGTTCTCATACCTAACTCTACATAAAAGAATTCATACTGGAGAGAAACCCTACAAATGTGATGAATGTGGCAAAGCCTTTAACCAGTGTTCAAACCTCACTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCGGTGCTCACACCTTACTGAACATAAAAGAATTCATACTGGAGAGAAGCCCTATAAATGTGAAGAATGTGGTAAAGTCTTTATATCTTGTTCAAGCCTTTCAAACCATAAGAGAATTCATGCAAGAGAGAAATGCAACAAATCTGAAGAATGTGGCAAAACCTTTAACCACTGCTCAGACCTTAATGAACATGAGAAAATTCATACCTGAGAAAAATCCTACAAATGTAAAAAATGTGGCAAAGCCTTTAATACCTGTTCATGTCTTACTCAGGATCAGAGTTCATGTTGAACTAAAGAATTATAAATATAATGACTGTCAAAACACCTTTCACAGAAAAAAATAATTTTACCACAGATTAATTTGTTCATTAATGAAACTTTAATTCTCCGTCTTTTTTTTTTTTttggtctacataaatctatccttatgccagtactatattgtttaattactgtaacattgtagtaagagtttatatcaggagtgtaagttactgaattttgttatcgtttttcagaattcttgtgtgtttaattttctttacatgtttatatggattttaggaagagcttgtcaatttctattaaagaaaagctacattggaatttgca

Publications

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