Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name MKRN1P5
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chrX:40670828-40673610  UCSC
Strand +
Parental Sequence XM_015135050.2
Parental seq. overlap 1974 bp
Parental seq. overlap (%) 59.1%
Genomic Region Intergenic
Retrocopy Summary MKRN1P5, located on chrX:40670828-40673610, is a retrocopy of the parental gene MKRN1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MKRN1
Full Name makorin ring finger protein 1
Also known as -
Coordinate chr3:166872513-166893235
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MKRN4P
Chimpanzee Pan troglodytes MKRN1P8
Bonobo Pan paniscus MKRN1P8
Gorilla Gorilla gorilla MKRN1P8
Orangutan Pongo abelii MKRN1P9
Gibbon Nomascus leucogenys MKRN1P5
Green monkey Chlorocebus sabaeus MKRN1P5
Crab-eating macaque Macaca fascicularis MKRN1P5
Baboon Papio anubis MKRN1P5
Golden snub-nosed monkey Rhinopithecus roxellana MKRN1P5
Marmoset Callithrix jacchus MKRN1P5
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MKRN1P5
TGGATAAGCAGTAATGGCGGAGGCTGCAGCTCCCGGAACAACAGCCACAACATCAGGAGCAGGATCTCCCCGACTCCGATCCCCACAGTCACCGCCCCGTCCCCGAGAACAGCTGGACTAAACAGGTCACCTGTAGGTATTTTGTGTATGGGATTTGTAAGGAAGGAGATAACTGTCGCTACTCGCATGACCTCTCTGACCGTCCGTGTGGAGTAGTGTGCAGTTGTTTTAAGCGAGGGTACTGTCTTTATGGAGACCGCTGCAGATGTGAACATAGTAAGCCGTTGAAACAGGAAGAAGCAACTGCTACAGAGCTAACTACAGAATCATCCCTTGCTGCTTCCTCAAGTCTCTCCTCGATAGTTGGACCACTTGTTGAAATGAATACAAACGAATCTGAGTCAAGAAATTCAAACTTTGCAACTGTAGGAGCAGGTTCAGAGGACTGGGCGAATGCCATTGAGTTTGTTCCTGGGCAACCCTACTGTGGCCGTACTGTGCCTTCCTGCACTGAAGCACCCCTGCAGGGCCCAGTGACCAAGGAAGAATCAGAAAAAGAGCAAACCGCGGTGGAAACGAAGGAGCTGTGCCCCTATGCTGCAGTGGGACAGTGCCGATATGGGGAGAACTGTGTGTATCTCCACGGAGATTTATGTGACATATGTGGGCTGCAGGCCCTGCATCCGATGGATGCTGCCCAGAGATCACAGCATATACAATCGTGCATTGAAGCCCATGAGAAGGCTATGGAGTTCTCATTTGCTGTGCAGCGCAGCAAGGACAGGGTGTGTGGGATCTGCATGGAGGTGGTCTATGAGAAAGCCAACCCCAGCGAGCACCGCTTCGGGATCCTCTCCAACTGCAACCACACCTTCTGTCTCAAGTGCATTCGCAAGTGGAGGAGTGCTAAGGAATTTGAGAGCAGGATCGTCAAGTCCTGCCCACAATGCCGAATCACATCTAACTTTGTCATTCCAAGTGAGTACTGGGTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCAGAAATACAAGAAAGCAATGAGCAACAAGGCATGCAGGTATTTTGATGAAGGACGTGGGAGCTGCCCATTTGGGGAGAACTGTTTTTACAAGCATGTGTACCCTGATGGCCGTAGAGAGGAGCCACAGAGACAGCAAGAGGAAACATCAAGCAGACACCAGGCCCAAGGAAGGAACCACTTCGTGGAATTCTTTGAGGAAGGAGCGAACAGCAACCCCTTTGATGATGAAGAAGAGGCTGTCACCTTTGAGCTGGGAGAGATGTTGCTTATGCTTTCGACTGCAGGTGGGGACAACGAACGGACAGACTCTGAAGATGTGTGGGACTTGTTTTGTGATGAAGAATTTTGTGTCTTAGATCTATAGAAACCTTGCGTGGTGTGTGAGCTGGTCTGCTGACCCCAGACAGCAGCTGTCCCCTGGGGTGGTGTGGCAGTGCCTGTGTTCTCTCCTAGGCAGGCCTATCAACTCCAGGTGCTGTGGTAAGAATATTTACCCAGGGCCTGTCTTCTCAACCCCCTCACCTTTCCCCAACGAGTGTGTTGTTTTCCCTGTTGAAAAAAGTTACAAAAATAAGTCTTAAAGTTAGTTTTTTAAAGTTAGTTTTTTGTAACAGGCATGAGCCACCGCGCCTGGCTTTAAAGTTAGTGTTTTGTAACAGGCATGAGCCACGGCACCTGGCTTTAAAGTTAGTTTTTTTGTAACAGGCATGAGCCACGGCGCCTGGCTTTAAAGTTAGTTTTTTGTAACAGGCATGAGCCACTGTGCCCGGCCTTAAAGTTAGTTTTTTTGTAACACGAATTTAACTGTCGGACAGTTAGTTTAGGTGTGTTGCATCATCTGTTTTCAACCAGATTGTGTTTATGGACTTTTCACACACTAACTTTGAGGACCCCAGGTTCAAAACTAAAAGCAGTGGCCCTGCTTTGGGATCCAATGATAGGAGTGATGGGTGAAGGGATCTAAGCTGGCCAGTAGCCTTCTAAGCTTCTCAAACCTGCATAGATGCAGTATTATTGGCCTTGGTAGAAGACCTTGGTTTAGTGGTTTAAGTCTTGTATGGCAGTTAGATCTTAAAGGACAAAGCAGTATATTGGTAGTTGTCAATATAGCAGTACTAGCTATGTTTATATAAATAAGAGAAATGGAGTTAGCCATAGAGGTTAAAACTACCTGGTTATCCCATATATTAACCCAAACTGGGTCTTGGATACACAGTTGTATTTAATGTTTTACGATCTAGTCTTTCCAATATAGGCATTTTCTGAAAAACATTTGTCTTCATTTGGGGCATTTTGTTGT
>XM_015135050.2
TCAGCGGCGCCGTGGGCGGGCCGCGGGCGCGCACGCTCCGGGCCCGCAGTTGAAGTGGCGAGAGCGCTCAGAGAAGCGACGCATAGCAGGCGGGGACGGAGCGGGTGCCTCAGTGtccttcccctcccctctcctggcctcgccgtcctctccCCGCAGCCGGACCGGAACTATGTGATCCCGGAAGTTCCGGGGCCTTTGCTGTGTGGGATAAACAGTAATGGCGGAGGCTGCAGCTCCCGGAACAACAGCCACAACATCAGGagcaggagcggcagcggcggcggcggcagcagcCTCCCCCACCCCGATCCCCACAGTCACCGCCCCGTCCCTGGGGGCGGGCGGAGGGGGCGGCGGCAGCGACGGCAGCGGCGGCGGCTGGACTAAACAGGTCACCTGCAGGTATTTTATGCATGGGGTTTGTAAGGAAGGAGACAACTGTCGCTACTCGCATGACCTCTCTGACAGTCCGTATAGTGTAGTGTGCAAGTATTTTCAGCGAGGGTACTGTATTTATGGAGACCGCTGCAGATATGAACATAGCAAGCCATTGAAACAGGAAGAAGCAACTGCTACAGAGCTAACTACAAAGTCATCCCTTGCTGCTTCCTCAAGTCTCTCATCGATAGTTGGACCACTTGTTGAAATGAATACAGGCGAAGCTGAGTCAAGAAATTCAAACTTTGCAACCGTAGGAGCAGGTTCAGAGGACTGGGTGAATGCTATTGAGTTTGTTCCTGGGCAACCCTACTGTGGCCGTACTGCACCTTCCTGCACTGAAGCACCCCTGCAGGGCTCAGTGACCAAGGAAGAATCAGAGAAAGAGCAAACCGCCGTGGAGACGAAGAAGCAGCTGTGCCCCTATGCTGCAGTGGGAGAGTGCCGATACGGGGAGAACTGTGTGTATCTCCACGGAGATTCTTGTGACATGTGTGGGCTGCAGGTCCTGCATCCGATGGATGCTGCCCAGAGATCACAGCATATCAAATCGTGCATTGAGGCCCATGAGAAGGACATGGAGCTCTCATTTGCTGTGCAGCGCAGCAAGGACATGGTGTGTGGGATCTGCATGGAGGTGGTCTATGAGAAAGCCAACCCCAGCGAGCGCCGCTTCGGGATCCTCTCCAACTGCAACCACACCTACTGTCTCAAGTGCATTCGCAAGTGGAGGAGTGCTAAGCAATTTGAGAGCAAGATCATAAAGTCCTGCCCAGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTGGGTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCTGAAATACAAGGAGGCAATGAGCAACAAGGCGTGCAGGTATTTTGATGAAGGACGTGGGAGCTGCCCATTTGGAGGGAACTGTTTTTACAAGCATGCGTACCCTGATGGCCGTAGAGAGGAGCCACAGAGACAGAAAGTGGGAACATCAAGCAGATACCGGGCCCAACGAAGGAACCACTTCTGGGAACTCATTGAGGAAAGAGAGAACAGCAACCCCTTTGACAACGATGAAGAAGAGGTTGTCACCTTTGAGCTGGGCGAGATGTTGCTTATGCTTTTGGCTGCAGGTGGGGACGACGACCTAACAGACTCTGAAGATGAGTGGGACTTGTTTCATGATGAGCTGGAAGATTTTTATGACTTGGATCTATAGCAACCTTGCGTGGCGTGTGAACTGGTCTGCTGACCCCAGACAGCAGCTGTGCCCTGTGGTGGTGCGGCAGGGCCTGTGTTCTCTCCTAGGCAGGCCTCTCAACTCCAGGTGCTGTCCTAAGAATTTTTACCCAGGGCCTGTCTTCTCAACCCCTCACCTTTCCCTGAGGAGTGTGTTGTTTTCCCTGTTGAAAAAAAGTTACAAAAATAAATCTTAAAGTTAGTTTTTTGTAACACAAATTTAACTGTCAGACAGTTAGTGTAGGTGTGTTGCGTCATCTGTTTTCAACCAGATTGCGTTTATGGACTTTTCACACACTCATTTTGAGGACCCCAGGTTCAAAAGTAAAAGCAGTGGCCCTGCTTTGGGGTCCAAGAATAGGAGTGATGGGTGAAGGGACCTAAGCTGGCCAATAGCCCTCTGCCCCAGACATGGGATGTGGATCCTTGAGGTTTCTGGTGAAATCTGCACATCTGTGTTTTTTTTTATCTGTTCCCTACCCTGTAATCCCTACCACGTGCACTTGTTCTGTGGTTTTGGTCTCTTGTTTAATTGCACACAAGTAATACTACTGGGTAACCAGAATCAGGGGTGAATGTGTTGAGATTTCTACTGTTTTGCATGATAGGAAAATTGAGAAAGAATACATATAAAAGATAGAGAGGCATAACATCAATGCAGAGTTGGAAGTTGACTCCCAAGGGCTGACATGgtgtgtgtgagtgtgggtgtgtgATAAGCTTCTCATCCCTGCATAGATGCAGTATTCTTAGCCTTAGTAGAAAAACTTGGTTTAGTGGTTTAAGCCTTGTGTGACGGATAGATCTCAAAGGGCAAAGCAGTATATTGGTAGTTGTCAATATAGCAGTGCTAGCTCTGTCTATATAAATAGAGAAATGGGGTTAGCCATAGAGGTTAAAACTACCTGGTTATCCCATATATTAACACAAACTGGGTCTTGGATACACAGTTGTATTTAATGTTTTACGATCTAGCCTTTCCAGTACAGGCACTTTCTGAGAAACCTTTGTCCTCATTTGGGGCATTTTGTTGTCGGGTTTTTAGTGTTTGTTTTTGTGAGTATCTGCCTCATTCCACCCCTGAGCTTTCAGGTAGACAGATGTGGTTCAAAACTCTGTTCTAAGGTGTTTATTGTAGTGGAGTAATGGGTTTGCAGTGATAAGTCATACTTTTCCACCGAAGGGGAGGGCTTGGGAGAATCCCTGAGACTAGCTAAAGTTAAGTTGTTGGAAGAATTCCTTGATTGGAAATTTTACCTTTGTGTTTTGTTGCTCTGTTTCCTGAAAGTAACTCGGGGATGCTCCTGGTGTGTCCATCTACTGCTTTGATTCCTTGGATCCCGCTCATTCTTTCACTTTAAGAAAAAACAAATAATTGTTGCAGAGGTCTCTGTATTTTGCAGCTGCCCTTTTGTAAGAAGCACTTTTCCCAAATAAAACAATTTAAAAAAAAAA

Publications

PMID - Link Title