Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ACTC1P1
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Taeniopygia guttata
Coordinates chr18:1537642-1538001  UCSC
Strand +
Parental Sequence XM_002200500.5
Parental seq. overlap 279 bp
Parental seq. overlap (%) 19%
Genomic Region Intragenic (ACTG1)
Retrocopy Summary ACTC1P1, located on chr18:1537642-1538001, is a retrocopy of the parental gene ACTC1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACTC1
Full Name N/A
Also known as -
Coordinate chr5:32950707-32955796
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ACTC1P2
Bonobo Pan paniscus ACTG2P6
Gorilla Gorilla gorilla ACTC1P1
Rhesus Macaca mulatta ACTC1P1
Baboon Papio anubis ACTC1P1
Golden snub-nosed monkey Rhinopithecus roxellana ACTC1P1
Horse Equus caballus ACTC1P1
Sloth Choloepus didactylus ACTA2P1
Chicken Gallus gallus ACTA2P1
Budgerigar Melopsittacus undulatus LOC101880149P1
Chimpanzee Pan troglodytes Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Turkey Meleagris gallopavo Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ACTC1P1
GCAGATCATGTTTGAGACCTTCAACACCCCGGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTCTACGCCTCGGGCCGTACCACGGGGATTGTAATGGACTCCGGGGACGGTGTCACCCACACCGTGCCCATCTACGAGGGCTACGCCCTGCCCCACGCCATCCTGCGCCTGGACCTGGCGGGCCGCGACCTCACCGACTACCTCATGAAGATCCTCACCGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGCGAGATCGTGCGCGACATCAAGGAGAAGCTGTGCTACGTGGCGCTGGACTTCGAGCAGGAGATGGCCAcggccgcctcctcctcctcgctggAGAAGAGCTA
>XM_002200500.5
AGAAGGTGGCTGCTCCggcccgccgcggccccggaCGACGCTGCCCCTCGGGGGGTATAAATTGGGGCGTCTCCGCCGAGCCAGCACCCAGGGTCTCCTCCGCTGCCCCCCGCCGCCGGTGCTGGTCTGGTTCGTGATTCCTTCCGAAGATGTGTGACGACGAGGAAACCACCGCACTGGTGTGCGACAATGGCTCGGGGCTGGTCAAGGCGGGCTTTGCCGGGGACGATGCCCCCAGGGCCGTTTTCCCGTCCATCGTCGGTCGCCCGAGGCACCAGGGTGTTATGGTTGGTATGGGTCAAAAAGATTCCTATGTGGGTGATGAAGCTCAGAGCAAAAGAGGTATCCTTACTTTGAAATACCCAATTGAACACGGCATCATCACCAACTGGGATGACATGGAAAAGATCTGGCACCACACTTTCTACAATGAACTCCGTGTGGCCCCTGAGGAGCACCCTACTTTGCTCACAGAAGCCCCCTTGAACCCAAAAGCTAATCGTGAAAAGATGACTCAGATAATGTTTGAGACCTTCAACGTACCTGCTATGTATGTGGCAATCCAGGCTGTCCTGTCTCTGTATGCTTCTGGTCGCACAACagGTATTGTTCTTGATTCCGGAGATGGTGTCACCCACAATGTACCTATTTATGAAGGGTATGCTTTGCCTCATGCTATCATGCGTCTGGATCTGGCTGGCAGGGATCTTACTGACTACCTCATGAAGATCCTCACAGAGCGTGGCTACTCCTTTGTGACAACAGCGGAGCGTGAGATTGTTCGTGACATCAAAGAGAAATTATGCTATGTTGCACTGGACTTTGAGAATGAAATGGccactgctgcctcttcctcctctctggaAAAGAGCTATGAATTGCCTGATGGTCAAGTGATCACAATTGGTAATGAACGTTTCCGCTGTCCTGAAACCTTATTCCAGCCATCCTTTATTGgtaTGGAATCTGCTGGTATCCATGAAACTACCTATAACAGCATCATGAAGTGTGATATTGATATCCGTAAGGACCTCTATGCTAACAACGTCCTCTCAGGTGGTACAACAATGTACCCTGGCATTGCTGATCGCATGCAAAAAGAAATCACTGCTCTTGCTCCTAGCACTATGAAGATCAAGATCATTGCCCCTCCTGAGCGCAAGTACTCTGTCTGGATTGGTGGCTCCATTCTAGCATCTCTGTCCACCTTCCAGCAAATGTGGATCAGCAAACAGGAGTATGATGAAGCTGGTCCATCCATTGTACACCGCAAGTGCTTCTAGGCACCTCCCCCCTCAATTTACTTCCCACTCAGGATGACGACAATATGCTTCTTGGAGTCTTCTGGCAAACCTTCCCGAACTCTTCAGTCATTGTACAGTTTGTTTACACACCCGTGCAATTTATTTGTGCTTCtaatatttattgctttataAATAAACGAGATCTGGGACTTGCAACCTACAAA

Publications

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