Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SP1P1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in NW_022611472). Each line represents a retrocopy.
Species Taeniopygia guttata
Coordinates chr2:30947265-30947515  UCSC
Strand -
Parental Sequence XM_030259201.2
Parental seq. overlap 210 bp
Parental seq. overlap (%) 3.6%
Genomic Region Intergenic
Retrocopy Summary SP1P1, located on chr2:30947265-30947515, is a retrocopy of the parental gene SP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SP1
Full Name N/A
Also known as -
Coordinate NW_022611472:379247-393804
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Dolphin Tursiops truncatus KLF16P2
Horse Equus caballus KLF16P1
Dog Canis familiaris KLF16P1
Kuhl's pipistrelle Pipistrellus kuhlii LOC01009P3
Sloth Choloepus didactylus KLF16P1
Platypus Ornithorhynchus anatinus SP1P1
Chicken Gallus gallus SP1P1
Budgerigar Melopsittacus undulatus LOC101880894P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Turkey Meleagris gallopavo Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SP1P1
gcacagctgccacatccccGGCTGCGGCAAGGTCTACGGCAAAACCTCGCACCTGAAGGCGCACCTGCGCTGGCACACGGGCGAGCGGCCCTTCGTCTGCAACTGGCTCTTCTGCGGCAAGCGCTTCACCCGCTCCGACGAGCTGCAGCGGCACCTGCGGACCCACACGGGCGAGAAGCGCTTCGCCTGCCCCGTCTGCAACAAGCGCTTCATGCGCAGCGACCACCTCAGCAAGCACGTCAAGACCCACA
>XM_030259201.2
GGGAGCCGAGGGCGGGGGGGCCGTGCGGGAGGGCCGCGGGAAGGAGCGAGCGGCCGGGGGCGTTCCGCGCCCCCTCCCCGGTGCAGAGCCCGGTGAGGGGTGCCGGGGGTGACGGCGGCAGCCCCGGTGCCCGGCGGAGGATGAGGAGGCGGCCGAGCGCTGGCGGAGCGAGGACTTGGTGGGAGAGGAGCCCCCCGCGctggcggggccgcgggcgggcagccccgggccgggaTCCCGCGGGCCGGACCCACGCCGGGGGATCCCGGGGCGGGAGACCACGAGAGCACCGAGGAGATGTCGGCTGTGAAGCCCGACAAGGGCGAAGGCGACGCCAGCAGCACGAGCAGCGGCGGCGGTGGGGAGGCGCAGGAGTCACAGCCGTCCCCgctggccctgctggcagccACCTGCAGCCGCATCGAGTCTCCCAATGAGAACTCCAACAGctcccagggccagcagggcgGGAGCGGCGAGCTGGACCTGAACGCGGCCGCCGCCCAGCTCACCCAGTCGGCCAACGGCTGGCAGATCATCTCGGCGGGCTCCAGCACCCCCACGGGCTCCAAGGAGCCGGGCAGCAACGGCAGCAACGGCGGCGACGCCTCCAAGAGCCGCCCGGTCAGCACCGGGCCCTACGTGGTCACCTCGGCGTCCGGCCTGCAGAACCAGCAGGTGCTGACGGGCCTGCCGGGCGTCATCCCCAACATCCAGTACCAGGTGATCCCCCAGTTCCAGACCATCGacgggcagcagctgcagtttgcCACCACCCCGGCGCAGGTGAACGTGCAGCAGGATGCCTCGGGGCAGCTGCAGATCATCCCCGGCTCCAACCAGCAGATCATCACGAGCCGTGCGGGCGGCAGCAACCTCATCGCCATGCCCAACCTGCTGCAGCAGGCCGTGCCCATCCAGGGCGTGGGGCTGGCCAACAACAGCCTCTCCGGGCAGACCCAGTACGTGGCCAACGTGCCCGTGGCCCTGAACGGCAACATCACCCTGCTGCCGGTCAACAGCGTGGCCGCCAGCCTGGCGCCCACGTCCCAGACGGGCACCCTCAGCAGCTCGGGCTCGCcggacagcagctcccagccgGCCACCTcgggggctgccagcagctcgGGCAGCACGGCCACGTCCCAGGCCAGCTCGGGCGCCTTCTTCACCAACGCCAACAGCtactccaccaccaccaccaccagtaACGTGGGCGTCATGAATTTCTCCACCAGCGCCACGGTGGGCACCAACGTGCAGGCACAGACCCCCCAGAGggccagcagtgtccccagctcGGACTCTCTGCAGAGCCCGGTGTCCGGGGTGGCCCTGCAGCCGGGGCAGCAGAAGGAGGGGGATCAGAGTCAgcagtcacagcagcagcagcagcagatcctgATCCAGCCGCAGCTGGTGCAAGGAGGGCAGACGATCCAAGCCCTCCAGACCACGCCGCTGTCTGGGCAGACCTTTGCCACTCAAGCCATCTCCCAAGACACCTTGCAGAACCTGCAGCTGCAAGCCGTGCCCAACTCCGGCCCCATCATCATCCGCACGCCCACGGTGGGTCCCAACGGGCAGGTGAGCTGGCAGACCATCCAGCTGCAGAACCTGCAGGTGCAGAACCCCCAGGCGCAGACAATCACGCTGGCCCCCATGCAGGGAGTGTCGCTGGGCCAGAcgggcagcaccagcaccacgCTGACCCCCATCGCCTCCCTGCCCAGCGGCACCGTCACCGTCAACGCCGCCCAGCTCTCCTCCGTGCCGGGCCTCCAGACTATTAACCTCAGTGCCTTGGGAGCGTCCGGGATCCAGGTGCaccagctgcaggggctgcccctGGCCATCGCCAACGCCCCCGGTGAGCACggggcccagctggggctgcacgGCGGCAGCGGGGACGGGCTGGGCGACGAGAGCGCGGCCGTGGAGGAGGGGGAGACCAGCCcggacccccagccccagcagggccgGAAAACGCGGAGGGAAGCCTGCACCTGCCCCTACTGCAAGGAAGGAGAGGGCAGgagctctggggacCCAGGGAAGAAGAAGCAGCACATCTGCCACGTGCCGGGCTGCGGGAAGGTGTACGGGAAGACGTCTCACCTGCGGGCGCACCTGCGGTGGCACACGGGGGAGAGGCCCTTCATCTGCACCTGGGTGCTGTGCGGGAAGCGCTTCACCCGCTCCGACGAGCTGCAGCGGCACAAGCGCACGCACacagGAGAGAAGAAGTTCGCCTGCCCGGAGTGCCCCAAACGCTTCATGCGCAGCGACCACCTCTCCAAGCACATCAAGACCCACCAGAACAAGAAGGGAGGCGCCGCCGGCGTGGCCATGAACGTCTCGGCCGTGCCCCTGGACTCGGCGGCCTCGGccgagggcggcggcggcggcgcaaCGCCCTCGGCGCTGATCGCCACCAACATGGTGGCCATGGAGGCCATCTGCCCCGAGGGCATCGCCCGCCTGGCCAGCAGCGGCATCAACGTCATGCAGGTGGCCGACCTGCAGTCCATCAACATCAGCGGCAACGGCTTCTGAGCGCTGCCACCTCCACTCGAAGGCCAgagctatatatatatatattttttaatttcggcttgattttttttttttttttttttttttgtccccccctccctccctccccgtttttttcctcccccgcccctcctgcctccccaccCGAAGTCCCTCGGCGTCGTCACGCCTCGGTCCTTTtagcaaaaaaaacaaaaaaaaggcaaaaaaaaaccaaaaaaaaaagaaaaccaacaacaaaaaagaaaccctgACAACAGAAATATCaacaaaacaatacaaaaaaaaaaaaagcaaaaaagcaaaaaaaaaaagaagagaaaagattctatattattattatatatataaaaatataaaatgtgttCGTTTGAGAGAGGAGAGATGTTGCTGTGACCATGGCGTGGTCCCTTTGATGCCTTATCCTGGAGCAGGTTGGCCCCTCTGGGACATGCCCGAGCTCTCCCTCCCCGCCCGGACCCCCCCAGAGCCCCGCACCCTCCCGGGCGCTCGGACATTTGCTCTGAGGTGACTCTGTCATTCCTTTGGCATTCTCGGGGGAGATCCCGCTGGAGTTTTCGCCCTTGGACTCCCACTGCCCTCCCCTGCCTCGGCAggtgttgtttttattttctttctctggatCTGGGTTTTTCCAGCCGTTTTCTTGGCGAGGCTCCCGGTCCCGTGGGagtggagctgctcctgggaaggTCTCGGACAGAGGGGCCGGGACGCAGCCCTGGAGGGACAACTGGAGCCTGCTCGGGGGgaaaagttgattttttaattacagcCAGCATTggaattaataataatatagtAATAATTGGGAAAAAGGAGAATCTGCGGAGCTCAGCCGGTCTGGAGCGAGGGGGAAGCACCGCAGGGACACGAGGGTTTTGTTGTGGcacccacagaaaaaaaggaaaaaaggtgcTGGAAATAGGGAGagcttgtttaaaaaacaaccaaaaaggGTTTTGCAGGATCCTGCTCTTCCCGCCGTGGGAGGGCTCGGTCCTTTCCGCTCTTCCTCCCAcaccctcctcttcctgccCCAGGCACAAAGGGATCCCCAGACGGGGAAATTGGGATTGTTCCcgagcagcagctttggggtgAGCCTGGGGGGCCCTGGAGTGAccccgaggaggaggaggaggaggaggaggacagggagctgagcaggagcttCCCCGCTCCCATCCTGGGGtcagggggtgcagggggagAACCCCCGGGGGCACGGCAGATCCATGAATCCCACATGCCCCAGGGCATTATTCCCACCTACCCCAAGAATTAATACCACCTACCCCAAGAATTaatccctcctgccctgggcattAATCCCACCTGCCCCAGGAGTTCATCCCTCCTGCCCCGGGTATTAATCCTGCCTGCCCCGGGCATTattccctcctgccctgggctgttcATCCCACCTACCCCAGGAATTAATCCCTCCTGCCCCGGGCATTAATTCCACCTACCTCGGGCATTAATCCCACCTGCCCCAGGAGTTCATCCCTCCTGCCCCGGGTATTAATCCCACCTACCCCGGGCATtattccctcctgccccaggagtTCATCCCTCCTGTCCCAGGCCGTTCTGGTGATGCTCCTGCCCGTGCTCCCcacccttctcctgctcccGTTCCCGGGAGAGGCTCCGGCAGAGCCAGGGGCACCGGGAAGGTGCCGAGTCCCTCGGGAAAGGAGCTGACCCCGCTGCCCATCTCCATCCCGGAGCTCTGCCCGCTCCGGAGCCCCGGGAACCAGCAGGAATCTTgttttgatttgggtttttattttgtaaaacacaaaaggaaaggcagcaggagctccccGGGGAGGGGGCGCAGGGCCCGGCCCCCCCAGACCCTCCCCCGCTCTCTCTCTCGATAtctatttttgcatttgtatatttttatataggAAACTTtaagcatttgtattttaataaccCTGTGAAGCACTATGAGCTCCCcccgcccccacccccccagCCCAAAACCCACAAAGGATTGGGACAAAAAAACAGGAGGTTTCTTAATTTAATGCTCAATTTGATTATTTTACCCCCACCCGATGCCCCCCgagcccagctctgtccccagagGGGATCAAGTGCCAAACCCGATCCCGACCCGGTGCGGGGCTGTCCCCGGCGTGTCCCCCCGGGATTGTCCCCGCTGTGTCCCCGCTGTGTCCCCCCGGGGGTGTCCCCACTGTGTCcccccggggctgtccccactGTGTCCCCGCtgtgtgtcccctctgtgtccccccgggctgtccccgctgtgtcccccgggggtgtccccgctgtgtcccccctggggtgtccccactGTGTCCCCCCGgcctgtccccgctgtcccttCCCCATGGATTGTCCCCAAAGGAGCTCGGCTTTCCTCTGGGACCCCGGGGGTCTCTCtcagagcctgggctgctcccctGCGCTTTTTTGGGGGGATCAGAGCATTTTGGGGGGCTCCACACCACCAGCGCTGCTCCCAgtgccggggctggggggcggCTGGATCCCCCCGCCCCATTTTGGCTCTGTTGGCACCGGGGTCccccccctgctcctgccaccccaaaccccccagcgccccccaaacccccccagccGTGCCCGGGGGGGACACAAAACACAAACGTGCCTTGACAAggggggacaggctggggatgagccCCCCGCTCCGCTCCTGCCCCCCACACCCCAGCGAggctctggggggctctggggggctcggggggctgcCCCATCTCCCAGCTTTAACCCACTGTCACCCCTTCATTccggggggccggggccggTTCTCTATGCAGcgggggggtcctggggggtccGGCCCCCCCAAACTGGCAATAATTCTCTCCCTGTTTGATCTCGTCCCGtctctgttgttttaatttggggaaggggaggggaggggggttGGTTTTTACAAATCCGGTGGCTGATGTACAAACCTCCCCCCCAGAGGcgatttttgggttttttttggggggggggggggaggatggtggatgatttttttttttctgggtccCAAAGTGCTATTTTTTTGTACAAAAAGACTTAGATGAAACTGTTAGTTTTGGGGGGCTCCTTTGTAAATGGGGAACGACGAGTTCTTTTTGTAATAAACACGAGTCGCTGGCGTTGTCTGGAA

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