Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101880894P2
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr21). Each line represents a retrocopy.
Species Melopsittacus undulatus
Coordinates chr8:41070879-41071122  UCSC
Strand -
Parental Sequence XM_034071604.1
Parental seq. overlap 202 bp
Parental seq. overlap (%) 7.9%
Genomic Region Intergenic
Retrocopy Summary LOC101880894P2, located on chr8:41070879-41071122, is a retrocopy of the parental gene LOC101880894. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101880894
Full Name N/A
Also known as -
Coordinate chr21:817912-827759
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Dolphin Tursiops truncatus KLF16P1
Horse Equus caballus KLF16P4
Dog Canis familiaris KLF16P4
Kuhl's pipistrelle Pipistrellus kuhlii LOC01009P1
Egyptian rousette Rousettus aegyptiacus KLF16P1
Sloth Choloepus didactylus KLF16P4
Platypus Ornithorhynchus anatinus SP2P1
Chicken Gallus gallus SP1P2
Zebra Finch Taeniopygia guttata SP1P3
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Turkey Meleagris gallopavo Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101880894P2
GCACAGCTGCCACATCCCCGGCTGCGGGAAGGTCTACGGCAAGACCTCGCACCTGAAGGCGCACCTGCGCTGGCACACGGGCGAGCGGCCCTTCGTCTGCAACTGGCTCTTCTGTGGGAAGCGCTTCACCCGCTCCGACGAGCTGCAGCGGCACCTGCGGACTCACACGGGCGAGAAGCGCTTCGCCTGTCCCGTCTGCAACAAGCGCTTCATGCGCAGCGACCACCTCAGCAAGCACATCAAA
>XM_034071604.1
GGTGGCCGCCTCGCAGCGCCGGGCCCGCCCGCCCCtcggccccccccgccccgccaTGAGCGACCAGGAGAGCCCCGACGAGATGGCGGCGATGAAGGCCGAGAAGGGCGACGGAGACGCGAGTAGCACGGGCAGCGCCGAGGCGCAGGAATCCCAGCCCTCCCCGCTGGCCCTGCTGGCCGCCACCTGCAGCCGGATCGAGTCTCCCAATGAGAACTCCAACAGCTCTCAGGGCCAGgcaggcggcagcagcagcgagCTGGACCTCACAGCAGCCGCTGCCCAGCTCGCCCAGTCAGCCAACGGCTGGCAGATCATCTCCACGGGCTCCAGCACCCCCACGGGCACCAAGGAGCCCGGCACCAACGGCACCAACGGCGGTGACGGCAGCAAGAGCCGCCCAGTGAGCGCGGGGCAGTACGTGGTGACGGCCGCCTCGGGGCTGCAGAACCAGCAGGTGCTGGCGGGGCTGCCGGGTGTCATTCCCAACATCCAGTACCAGGTGATCCCACAGTTCCAGACCATTGACgggcagcagctccagttcaccacggcggcggcggcggcaccggCGCAGGTGAACGTGCAGCAGGACGCATCCGGGCAGCTCCAGCTCATCCCCGGCACCAACCAGCAGATCCTGACGGGCCGCACCGGCACCGGCAACCTCATCGCCATGCCCaacctgctgcagcaggcagtgccCATCCAGGGCGTGGGGCTGGCCAACAACACGCTCTCGGGGCAGGCCCAGTACGTGGCCAACGTGCCCGTGGCTCTGAACGGGAACATCACCCTGCTGCCCGTCAACAGCGTGGCCGCCAGCCTGGCGCCCACCTCGCAGACCGGCACCTTGAGCAGCGCCGGCTCCCCGGACAGCAGCTCCCAACCGGCCACCTCCGGCTCCGCCATCAGCGCCAGCACCGCGGCCACGTCGCAGGCCGGCTCCGGAGCCTTCTTCACCACCGCCAACAGCTattccagcaccagcaccagcaccggcaATGTGGGCATCATGAATTTCTCCACCAGCACCACGGTGGGCAGCACCGTCCAAGCGCAGGCGCCCCAGAGGGTCAGCGGCGTCCAGAGCTCGGACTCTCTGCAGAGCCAGGTTTCGGGGGTGCCTTTGCCGTCGGGGCAGCAGAAAGAGGGGGATCAGGGCCAGCAATCCCAGCAGCAGATCCTGATCCAGCCGCAGCTGGTGCAGGGGGGGCAGACGATCCAAGCCCTGCAGAGCACGCCGCTCTCCGGGCAGACCTTTGCCACCCAAGCCATCTCGCCGGACACCCTGCAGAACCTGCAGCTCCAGGCCGTGCCCAACTCGGGGCCCATCATCATCCGCACACCAACAGTGGGGCCCAACGGGCAGGTGAGCTGGCAAACCATCCAGCTGCAGAACCTGCAGGTGCAGAACCCCCAGGCGCAGACAATCACCCTGGCCCCCATGCAGGGGGTGTCGCTGGGGCAGGcgggcagcaccagcaccacgCTCAGCCCCAGCGGCACCGTCACCGTCAACGCTGCCCAGCTCTCCTCCGTGCCCGGCCTCCAGACTATAAACCTCAGTGCCTTGGGAGCGTCTGGCATCCAGGTCCACCAGCTCCAGGGGCTGCCTCTGGCCATTGCCAATGCTGCCGGTGACCACGGAGCTCAGCTGGGGCTGCATGGAGCCGGGGGGGACACGCTGGGGGATGAGAGCACGGCTGTGGAGGAGGGGGAGACCAGCCCggacccccagccccagcagggcCGCAAAGTCAGGAGGGAGGCTTGTACCTGCCCCTACTGCAAGGACAGCGAGGGCAGGAGCTCTGGGGATCCAGGGAAGAagaagcagcacatctgccACATCCCCGGCTGCGGCAAGGTCTATGGCAAAACCTCTCACCTGCGGGCTCACCTGCGGTGGCACACGGGGGAGAGACCCTTCGTGTGCAGCTGGGTGCTGTGCGGCAAGCGCTTCACCCGCAGCGACGAGCTCCAGCGGCACAAGCGCACGCACACAGGAGAGAAGAAGTTTGCCTGCCCGGAGTGCCCCAAGCGCTTCATGCGCAGCGACCACCTCTCCAAGCACATCAAGACCCACCAGAACAAGAAAGGCGGCGGCGCCGGCAGCGCCGTGGCCATGAACGTCTCCGCCGTCCCCATGGACACGGCGGCCGAGGGCAACGGCTCCGCGGCCCCCTCGGCCCTCATCGCCACCAACATGGTAGCCATGGAAGCCATCTGCCCCGAGGGCATCGCGCGCCTGGCCAGCAGCGGCATCAACGTCATGCAGGTGGCCGACCTCCAGTCCATCAACATCAGCGGCAACGGCTTCTGAAGGCGCCCGCGGCATTCCTATGGGATCGCGCCGCATCCCAAGGCCAGAGCTCTCTCCTCTCTCTATGTTGGTTTTTAATCCAGCTTCACCGTATCATTTGttgggttcccccccccccccatttcacTCCCTAGTCCCTCCCCCGGCATTCCCGGGATGCGCTCCCGTAGCTTTAGCCTTCGACGCCATCATGCCTTGGGAAAATATACCAGTCTCAAGTTCACTTTTTAGGAAaaacg

Publications

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