Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CWF19L1P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_4) and its respective parental gene (in scaffold_m19_p_5). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_4:38957729-38957940  UCSC
Strand +
Parental Sequence CWF19L1_x4
Parental seq. overlap 174 bp
Parental seq. overlap (%) 3.7%
Genomic Region Intergenic
Retrocopy Summary CWF19L1P1, located on scaffold_m19_p_4:38957729-38957940, is a retrocopy of the parental gene CWF19L1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CWF19L1
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_5:22419533-22446179
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Cow Bos taurus CWF19L1P1
Sheep Ovis aries CWF19L1P1
Dolphin Tursiops truncatus CWF19L1P1
Horse Equus caballus CWF19L1P1
Dog Canis familiaris CWF19L1P1
Panda Ailuropoda melanoleuca CWF19L1P1
Cat Felis catus CWF19L1P1
Velvety free-tailed bat Molossus molossus CWF19L1P1
Greater horseshoe bat Rhinolophus ferrumequinum CWF19L1P1
Egyptian rousette Rousettus aegyptiacus CWF19L1P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CWF19L1P1
ATTCATCTACAGACAGAGATAGCAAATCTTCTCTTCACCCAAGGCAGCCTCACTGACCTCTTCAGCCTCCAGGACCTCGCTGATTTTTCCTTGCCAGCCCTGAAGTGGGAAAACACTTGGAAGCCAACATTGGTGCACACAGTTACATTGACCTGGCCAAAGGAGGCCTACCTAATAACCATGTCCTCCTCCCACCCATTGGACACAACCAG
>CWF19L1_x4
GCTGACGTCCTCATTGTGCTGCGGGCGCATCTTTCGGAGGAGTGCGCTTCGGCGTCCTAGTTTTTGGAGGTGGTCGCAACCGTGTTTCGGTGGGGGGACCGATGGCTGAGAAACCGCTGCGCCTCTTGGCTTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGAGCAATTCAGAAGAAAAGTGGAAACTTTGACGAAATTTCTTCGGCTCTGCTCCAGATGCTGAATGGGAGGAATATAAAACTGGCATCAAAAAAGCTCCTATTCAGACATATGTGCTGGGTGCCAATAACCAGGAGACAGTAAAGTATTTCCAAGATGCTGATGGGTGTGAATTAGCTGAAAACATTACTTACCTAGGTCGGAAAGGTGTGTTTACTGGAAGCTCGGGGCTGCAGATTGTGTACCTCAGCGGAACAGAGTCCTCAAACGAGCCCGTCCCGAGTTACAGTTTCAGTCCCAAGGATGTGTCTTCTCTGAGAACAATGCTGTGTGCCATACCCCAGTTTAAGGGTGTTGATATCTTGCTCACCTCCCCTTGGCCCAAGTATGTGGGGAACTTTGGGAATTCTTCTGGAGAAGTAGATACCAAAAAATGTGGCTCTGCTTTGGTCTCCAGTCTTGCCACAGGCTTGAAACCAAGATACCATTTTGCTGCTTTGGAAAAGACATACTATGAGAGGCTTCCATATCGAAACCACATTGTTCTGCAAGAAAATGCACAGCATGCCACCAGGTTCATAGCTTTGGCAAATGTTGGAAATCCAGAAAAGAAAAAGTACCTTTATGCATTTAGCATTGTCCCCATGAAACTAATGGATGCCGCAGAACTGGTAAAACAGCCTCCAGATGTCACGGAAAACCCTTACAGAAAATCTGGGAAGGAAGCATCTGTGGGAAGACAAATTCCTGCCCCCGAGGAAGAGTCAGCCTGTCAATTTTTCTTTGACTTGAATGAAAGGCAGGGGAGGAAGCGTTCATCCACAGGCAGAGAGAGCAAGTCTTCCCCTCACCCAAAGCAGCCTCGGAAACCTCCTCAGCCTCCAGGACCCTGCTGGTTTTGCCTTGCCAGCCCTGAAGTGGAAAAGCATTTGGTGGTCAACATTGGCACACACTGCTACCTTGCCCTGGCCAAAGGAGGCCTGTCTGATGACCATGTCCTTATCCTGCCCATTGGACACTACCAGTCAGTGGTGGACCTTTCAGCAGAGGTGGTGGAAGAGGTGGAGAAATACAAAGCTACACTGAGGAGGTTCTTTAAGAGCCAAGGGAAACGGTGTATTCTATTTGAGAGAAATTATAAGAGCCATCACCTCCAGCTCCAGGTCATTCCTGTGCCACTCAGCCGCTGCGCCACTGATGACATTAAAGACGCCTTCATTACCCAGGCACAGGAGCAACAGATAGAACTGCTGGAGATCCCAGAGCACTCTGACATCAAGCAGATTGCACAGCCAGGAGCAGCGTACTTTTATGTTGAACTTGACACAGGAGAGAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAGTTTGGAAGGTTTGTATAGTTTTTTAAAttttgtttttatttattattattatttatcctcacctgaggacatgattatcgattttagagagaagggaagggagggagaaagagagggaaagaaacacagttgtgggagagaaacattgattggttgcctgtcgtacatgttctgatgggggagcaaacccacaacccaggcatgtgccctgacctggaatcgagcctttgaccttttgattttcaagatggtgctccagtcaactgagtcacactggccagggtgtagtttcttattttaaatatattTTTACTAGACCTTCTCTGAACAAAATAGTGGGCTGAATGGACAGTTAAATAAAAAGCCAAATAAGAAACAGTTTTTGCCCCAAGGAAGCAATAGTCTTAGGGCAAGTCAGATATTTACATATATGACAGTAATGTGAAAAGTACCCTAACAGTTTTGAGGAGCAGTGTATTTTGGAGATTCAGAGAAGGAAGATCTTATGTTGGATAGGTGAAAAGCTTCAGGTTGAGCCTGAGAGACAGATTTAGAGGGCAGACATTGGACTGTCAGAGTTGTAGCCTGGGAAATGGAGAGCTACCCTTAAACAGATGTTCTGTGTCTGACACTGCGCCAAGAACTTTATATGCATTGCCTCATCCAGTCTCCCAGCTCTGTAAGGCAGGTACTGTTATCTCAGCTTACCAGTATGGAAGATGAGGCTTTAGAACAGtatccaacagaactttccccagtgatggaaatgccccgtgaatctgcactgtcctgtgcagtaatcactagccacaagtggccactaagcacttgaaatgtggctaatgtgagcgaggaactgaatttttaatttatattaatttggattaaaatgtaaatgtaaaatgtaactatatatgaatagtagctcctgGAGCATGGCTTGAGAGTGGTTAGGTAGTTTGTCCATGGTCACACAGTGGTGGGTGCAAATCCAGGACTGTTGGACCACAGAATGTGAGGCCTTACCCTCATTGTTCTGCACGGTCCTAAGGTTTTGGATGTGTGTTCATTTCTTCTCCTATCAGGCAGAACGTAACAGCAACACCATACAGGGAGTGGTATGAACTAGGCAAAGACTGAAGACAGGAATTTGGTGACCAGAAGAGATTGAGTATTGAGGGGAATCAAAAATCTGGAGAAAGATTATCTGATGCTGGTGTCTGGTCTGCAGCTGTTTTTTCACCCTAGTTAGAACTGAGCTTTGAGTCAACCTTGAGCCCTTTTCTTGGTCTAATTTGTAAAGCCTCCAAGAGATTGCCACCATTGAATAAGTCCAGAAGATGTAGTTGTCTACATTTTCAGAAAGATGATTAACAAATGAACAACTGTATTGAAAGCTTCAGACATTTGACATTATCTTTGCTGTTGCGTCAGCAACAGATGCAGACGTGAACACTGATGATAGGCACGTGATGACATACACACAGGCACGTAAGCCTGCAAAAGAGAGACTCTCTGATACTATGCTCATGATGGCTGAGTGTTTTGGTAAATGTGCTAACTTACAGTTAGAGAGCATTTTGTAGTTAACAAAATACATGAAAAGATTCCCCCCACCGCCCCAGCTGTACAAGAAAGGTAGTTCTGTCTTCATTTTACAGGCAAAGAAGTAGGTTCAAGCCTTGCCCAGGCAGCTAGAAATTACACTCAGGTCCTATGACCTTAGAAATTTGTTTTCAGCTCTTCTATTTATTGTAGCTTTAAAGTGGGAAATGATCCATATAGATGTGTGAACAGATTTACAACTAATACAGCAAAATAAGTAAAAATGAATAAATGTAAAGCAGTGGCAATTAAAAGCTAGCTTGTATATGTGTCTGTATGTAGCTTCTTGTTTTTTTATTTTTTTTGATACTGAGCCTGTGCTATTGTGCTTTTGTAGCCCTGAATTCCCTAAAAGTAGAGGCAGAAAGTCAGAGTGGATTATGGTACTAGATGCCTGACTCTGCACTATGCCCTTAGCTAACTCATGCTCTAATTGGGATGACAAAACTAGAGTTAAGGCAGGATGTAATCACAGCTGGTTGGTGCTTTGTGTTATCTCCATATCTCACAAAACTGTTCTTTTGTATTTCATAAGCAAGACTTAGATGTAATCACCTGTGCTAGTCATAGACAGCAAGTGGCAGAGCTAGGAATGGAATCATCTCTGATCTTTCTGTCCTGGGGCCTGTCCTCATTCTCCCGAGCCATGTTGCCTCTCTAAGTACCAATAAATGTAGTTTCAGGTTGTTCAGAGAAGAAACTGGGATGTAGGGGGTTAAGAAGAAGCAGGCCCTGACTGTCAGGTGTGGCTCAGTGGGTTGTGAATGTGTTGCCCCTCAAACCAAAAGggtttgtaggctaggtccctggttgggggcatgaagcagcaaccattcgatgtttatcttgcatgttgatgtttctctctctttttccttcccttcccctccctctaaaaataaataaataaaatctttaaaaaaaaaGAAACAgaggtaggatctgagctggtcacttaaaatgggtatgatcttgatagaatggcagagatggcactcagggaagagaagacagtatgagtagaggcggaggaagtcacatgccttcttcgggtgacgttgaggagaGCTCTCTGTCGGATGAGGATGGGGCGAGAGGGTGGTTTCAGACTGATGCTGTTGACTTCCTCGTGTTTTTTCCGCAGGGAGGTTCTAGCAAGTGAAGCCATCCTCAATATTCCTGACAAGTCTGACTGGCGGCAGTGCCAGACCAGTAAGGAAGAGGAGGCGGCCCTGGCTCGCCGCTTTCGGAAAGACTTTGAGCCCTTTGACTTCACTGCGGATGAGTGAAGTTTTTTAAAGAATTTACAGTCTCCTGTGGGGACTGTTTTCCTGCCTCTTTTTGGTACATTCCCATGGAACCTGTCTGCACCAAGAGGCCTAAAGCTGAATATTTTTCAGAAAAAGTCACATTCTAGGATGGAAATCCTACGTTAAAAGCATGTTTGTCATCCAGTTCCTAGTATCGCTTTTGTTTATCCACATTTTCGAAAACATTTAAATTATCAAATAAAATCTACATGCTTTTCCATGGT

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