Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name H3F3BP4
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_15) and its respective parental gene (in scaffold_m19_p_8). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_15:23473925-23474322  UCSC
Strand +
Parental Sequence H3F3B_x1
Parental seq. overlap 323 bp
Parental seq. overlap (%) 78.6%
Genomic Region Intergenic
Retrocopy Summary H3F3BP4, located on scaffold_m19_p_15:23473925-23474322, is a retrocopy of the parental gene H3F3B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name H3F3B
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_8:3805062-3805686
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens H3C1
Gorilla Gorilla gorilla LOC101140122P2
Orangutan Pongo abelii H3F3BP3
Pig Sus scrofa H3F3AP6
Dolphin Tursiops truncatus LOC117309382P5
Dog Canis familiaris H3-3BP5
Cat Felis catus H3F3AP6
Greater mouse-eared bat Myotis myotis H3F3BP7
Greater horseshoe bat Rhinolophus ferrumequinum H3F3BP6
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>H3F3BP4
TAAGCAGACGGCGCGCAAATCCACGGGCGGGAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCTGCCCGCAAGAGTGCGCCAGCCACCGGCGGCGTAAAGAAGCCCCACCGCTACCGGCCCGGCACCGTGGCCCTGCGCGAGATCCGCCGCTACCAGAAGTCCACGGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGTGCGAGGCCTACCTGGTGGGCCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTTGCACGCCGTATTCGCGGGGAGAGGGCTT
>H3F3B_x1
ATGGCCCGAACCAAGCAGACTGCTCGCAAATCCACGGGTGGGAAAGCGCCCCGCAAACAGCTGGCTACCAAAGCTGCCAGGAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAGCCTCACCGCTACAGGCCCGGAACCGTTGCGCTCCGAGAAATCCGTCGTTACCAGAAGTCGACCGAGCTTCTGATCCGGAAGCTGCCTTTCCAGCGGTTGGTAAGGGAGATCGCCCAGGATTTCAAAACAGACCTGAGGTTTCAGAGTGCCGCCATCGGTGCGCTGCAGGAGGCGAGCGAAGCGTACCTGGTGGGTTTGTTTGAAGACACTAATCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGGGAGAGAGCTTAA

Publications

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