Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HNRNPA1P34
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_15) and its respective parental gene (in scaffold_m19_p_3). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_15:52930734-52932285  UCSC
Strand -
Parental Sequence HNRNPA1_x7
Parental seq. overlap 1048 bp
Parental seq. overlap (%) 50%
Genomic Region Intergenic
Retrocopy Summary HNRNPA1P34, located on scaffold_m19_p_15:52930734-52932285, is a retrocopy of the parental gene HNRNPA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HNRNPA1
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_3:53585375-53590260
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Orangutan Pongo abelii HNRNPA1P79
Gibbon Nomascus leucogenys HNRNPA1P50
Marmoset Callithrix jacchus HNRNPA3P19
Dolphin Tursiops truncatus HNRNPA1P11
Velvety free-tailed bat Molossus molossus HNRNPA1P23
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HNRNPA1P34
TCATGTCTAAGTCAGAATCTCCCAAAGAGCCAAAACAGCTACAGAAGCTTTTTTACAGAGGTTTGAGCTTTGAAACAACAGATGAGAGTCTATGGAACCATTCTGAGCAATGGAGAATGCTCACAGATTGTGTGGTGATGAGAGATCTGAACAACAAGCACTCCAGAGGCTTTGGGTTTGTCACATATGCTACTGTGGAGGAGGTGTTTGCAGCCGTGAATGCCTGGCCACACAAGATGGATGGAAGAGTTGTGGAACCAAAGAGGGCTGTTTCAAGAGAAGATTCTCAAATACCAGGTGCCCATTTAACTGTGAAAAAGATTTTTATGGTAGTATGAAAAAATACACTGAAAGAAATCACCTAAGAGAATATTTTGAACAGTATGGGAAAATTTAAGTGATTCAAATCATGACTGACCAAGGTAGTGGCAAAAAGAAAGGCTTCATTTTAAGAAAAAGATAAGAAAGGCTTCACTTTTGTAAACTTTGATGACCATGACTCTAGACAAGATTGTTATTCAGAAATACCATATTGTAAATAGCCATAACTGTGAAGTAAGGAAAGCCCTCTTTAAGCAAGAGATGGCTAATGCTTCATTCAGCCTTAGAAACCGAACTTGTTCTGGAAACTTCAGAGGTGGTCATAGAGGTGGTTCTGGTGGGAATGACAACTTGGTCATGAAGGGAACTTTAGCAGTCAAGGTGACTTTGGTGATAGCGATGGTGGTGGTGGATATGGTGTCAATGGGGATGGCTATAATGGAGTTGGTAATGATGTAAGCAATTTTGGAAGtGGCAATACTTTGCCAAACCATGAAGCTGAGGTGGCTATGGCAGTTCCAGCAGCAGCAGTTAGCTCTGGCAGTGGCAGAAGGTTTTAATTACTGCCCAGAAGAGCCAGAGAAATCACAGGGGAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAACACAGTGGTGGCAAGGCCTAGCTGCTAAAAAGAAGTCATTTTGACAATGCTCATGTGAATGGCCAAAAAAACTTGAGGACTTTATTTGTGACTAATTATAACAGATTATTTTATTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACACAGGGTTTTTAATGTAGTTTTTTTAAATTTGTTTGAACCCATGCTGTTGAGTGCTAAATGTAATTAATAGTCTGATCATGATACTGAATAAATGTATCTTTA
>HNRNPA1_x7
AGATACGTTCGTTACATTACTCCTTTCTGCCGGTGGACGCCGCTGAGTAAGCATCGTTGAAGTTCTCTCTGCTGCAGTCGTCATGTCTAAGTCAGAGTCTCCCAAAGAGCCGGAACAGCTACGGAAGCTCTTTATCGGAGGTTTGAGCTTTGAAACAACAGATGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACAGACTGTGTGGTAAGACTTGGAAGAGAAAAGGGGTCCTAGAACTAGTTGATTTACTAGGCTTCTCGTGCCATAGGTCTTGTCTGAATACTTAATGGCTATTGATAACAGGATTATAGTTGGAAATGACAAGAAGGTGTGGCGTTAGAGAGCTAAAAAGCTCGCAATAAGTTTGTACAAGGATAATGGGAAACGGAAGGACTTTGTTTGAAGACTAATATAATTTCTTATTATCTTATTCAAGGTAGAAATGACAGTAGTTTGGGCGTCTTACTATGATTTTAAATGAATTACATCTTAGGTGATGAGAGATCCAAACACCAAGCGCTCCAGAGGCTTTGGGTTTGTCACATATGCCACTGTGGAGGAGGTGGATGCAGCCATGAATGCAAGGCCACACAAGGTGGATGGAAGAGTTGTGGAACCAAAGAGGGCTGTCTCAAGAGAAGATTCTCAAAGACCAGGTGCCCACTTAACTGTGAAAAAGATTTTCGTTGGTGGTATTAAAGAAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTGATTGAAATCATGACTGACCGAGGCAGTGGCAAAAAGAGAGGCTTCGCTTTTGTAACCTTTGATGACCATGACTCTGTCGACAAAATTGTCATTCAGAAATACCATACTGTAAATGGCCACAACTGTGAAGTAAGGAAAGCTCTATCTAAGCAAGAGATGGCGAGTGCGTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGAGGTGGTCGTGGAGGTGGATTTGGTGGGAATGACAACTTTGGTCGTGGAGGAAACTTCAGTGGTCGAGGTGGCTTTGGTGGTAGCCGTGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGATGgaagcaactttggaggtggtggaagctacaatgattttggcaattacaacaatcaatcttcaaattttgggcccatgaaaggaggaaactttggaggcagaagctctggcccctatggtggtggAGGCCAATACTTTGCCAAACCACGAAACCAAGGTGGCTATGGTGGTTCCagcagcagcagtagctatggcagtggcagaagGTTTTAATTATGCCAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGTTTTAGACAATACTCATGTGAATGGGCAAAAAAACTCGAGGACTGTATTTGTGACTAATTGTATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAGGGTTTTTAATGTAGTTTTTTTTTTTTCCTTTTTGCACCCATGCTGTTGATTGCTAAATGTAATAGTCTGATCATGACGCTGAATAAATGTGTCTTTTTTTTTAAATGTGCTGTGTAAAGTTAGTCTACTCTGAAGCCATCTTGGTAAATTACCCCAACAGTGTGAAGTTAGAATTCCTTCAGGGTGATGCCAGATTCCATTTGAAATTTATTTACAACCTGCTTGGGCACACATGCCATTGTCTTCAGAAACCTTGGTGTAGTTGAATTGATAAGTTACTGTGTTGTGACCTGGAGTTCACCATTAAAAGGGTCACCCAAGCAGAGTCACGGAGTTTATTTGGTTACTAATGGTTGTTGGCACATCCTATGCAATATACTAAATTGAATTATGGTACCAGATAAAATTATAGATGGGAATGAAGTTTGTGTATCATCCATTATCATGTGTAATCAATAAACGATTTAATATCCTCTTG

Publications

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