Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC02186P1
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Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_9) and its respective parental gene (in scaffold_m19_p_15). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_9:93710896-93711574  UCSC
Strand +
Parental Sequence LOC02186_x1
Parental seq. overlap 582 bp
Parental seq. overlap (%) 32.4%
Genomic Region Intergenic
Retrocopy Summary LOC02186P1, located on scaffold_m19_p_9:93710896-93711574, is a retrocopy of the parental gene LOC02186. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC02186
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_15:50897942-50922788
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens DCAF8P1
Chimpanzee Pan troglodytes DCAF8P1
Bonobo Pan paniscus DCAF8P1
Gorilla Gorilla gorilla DCAF8P1
Orangutan Pongo abelii DCAF8P1
Gibbon Nomascus leucogenys DCAF8P1
Green monkey Chlorocebus sabaeus DCAF8P1
Crab-eating macaque Macaca fascicularis DCAF8P1
Rhesus Macaca mulatta DCAF8P1
Baboon Papio anubis DCAF8P1
Golden snub-nosed monkey Rhinopithecus roxellana DCAF8P1
Marmoset Callithrix jacchus DCAF8P2
Mouse lemur Microcebus murinus DCAF8P1
Rabbit Oryctolagus cuniculus DCAF8P1
Pig Sus scrofa DCAF8P1
Cow Bos taurus DCAF8P1
Sheep Ovis aries DCAF8P1
Horse Equus caballus DCAF8P1
Dog Canis familiaris DCAF8P1
Panda Ailuropoda melanoleuca DCAF8P1
Cat Felis catus DCAF8P1
Velvety free-tailed bat Molossus molossus LOC02489P1
Egyptian rousette Rousettus aegyptiacus LOC02372P1
Sloth Choloepus didactylus DCAF8P1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Dolphin Tursiops truncatus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

This retrocopy transcript is not present in the database for expression quantification

Related Sequence

>LOC02186P1
TCAGGTGAAGACGCCGTTGTCTTTGCCATTGACCTCAGACAAGACCAGCCGGCTTCAAAAGTGGTGGTAACAAAAGAGAATTGGAGGAAAGTGGGACTCTACACGATCTCTGTGAATCCTGCCAATACTTACCAGTTTGCTGTGGGTGGAATGGACCAGTTTGTAAGAATTTACGACCAGAGGAAAATTGATGAGAATGAGAATAATGGAGTACTCAAGAAGTTCTGTCCTCATCACCTGGTCAGCTGTGACGCCGGAGTATACATCACCTGCCTGGTGTACAGCCATGATGGCACAGAGGTCCTGGCCAGTTACACGGATGAAGATATTTACCTCTTCCACTCCTCTAGCTGTGATGGGGCCCAGTATGCTAAGAGATATAAGGGGCACAGAAATAATGCCACTGTCAAAGGTGTTAATTTCTATGGCCCTGGGAGTGAGTTTGTGGTGAGCGGTAGTGATGATGGGCACATCTTCCTCTGGGAGAAATCATCCTGTCAGATCATTCAGCTCCTGGAGAGAGGGGACAGGGCAGGTACTGTAAACTGCCTTGAGCCCCACCCTTACCTCCCTGTGATGGCGACCAGTGGCCTAGACCATGATGCCAAGATCTGGGCACCCACAGCGAAAGATCCCACTCAGCTTCTTGGGTTAAAGGATGTGATTAAGAAGAACAAGC
>LOC02186_x1
ATGTCCAGCAAAGGGAGTAGCACAGATGGCAAAACAGACTTAGCTAATGGAAGTATGTCTAGCAGTCCAGAGGAGATGTCTGGAGCTGAAGAGGGGAGGGAGACATCCTCAGGCATTGAAGTAGAGGCCTCAGACCTGAGCTTGAGTTTGACAGGGGATGATGGTGGCCCCAATCGCACCAGCACAGAAAGTCGAGGCACAGATACAGAGAGCTCAGGTGAAGACAAGGACTCTGACAGCATGGAAGACACGGGCCATTACTCTATCAATGACGAAAACCAAGTCCACGATCGCTCagaggaagaggaggaggaagaagaagaggaagaagaaCATCCTCGGCGTCGTGTACAGCGCAAGCGGGCCAATCGTGACCAGGACTCATCAGATGATGAGCAGGCCCTGGAGGACTGGGTGTCCTCGGAAACATCAGCCCTTCCCCGACCTCGATGGCAAGCTCTTCCTGCCCTTCGGGAGCGGGAACTGGGTTCAAGTTCCCGTTTTGTATATGAAGCTTGTGGGGCAAGAGTCTTTGTGCAGCGTTTCCGCCTGCAGCATGGGCTTGAGGGCCATACTGGTTGTGTCAATACTCTGCACTTTAATCAGCGTGGAACTTGGCTGGCCAGTGGCAGTGATGACCTAAAAGTGGTGGTTTGGGACTGGGTGCGGCGGCAGCCGGTACTGGACTTTGAGAGTGGCCACAAAAGCAATGTCTTCCAGGCAAAGTTCCTTCCTAACAGTGGTGATTCGACCCTGGCCATGTGTGCCCGTGATGGGCAGGTGCGAGTAGCAGAGTTGTCTGCCACACAGTGCTGCAAGAATACAAAGCGTGTGGCCCAGCATAAGGGAGCATCCCATAAATTGGCCCTGGAACCAGACTCCCCCTGTACATTTCTATCTGCAGGTGAAGATGCAGTTGTCTTCACCATTGACCTCAGACAGGACCGTCCAGCTTCGAAGCTGGTGGTGACAAAAGAGAAGGAGAAGAAAGTGGGGCTGTATACAATCTATGTGAATCCTGCCAATACCCACCAGTTTGCAGTGGGTGGACGAGATCAGTTTGTAAGGATTTATGACCAGAGAAAAATTGATGAGAATGAGAACAATGGAGTACTCAAGAAATTCTGTCCTCATCACCTGGTGAACAGTGAGTCCAAAGCAAACATCACCTGTCTTGTGTACAGCCACGACGGCACAGAGCTCCTGGCCAGTTACAATGATGAAGACATTTATCTCTTCAACTCTGCTCACAGTGATGGGGCCCAGTATGTTAAGAGATACAAGGGCCACAGAAATAATGCCACAGTAAAAGGTGTTAACTTCTATGGCCCCAAGAGTGAGTTTGTAGTGAGCGGTAGTGACTGTGGGCACATCTTCCTCTGGGAGAAATCATCCTGCCAGATCATTCAGTTCATGGAGGGGGACAAGGGAGGTGTGGTAAACTGTCTTGAGCCCCACCCTCATCTGCCCGTGCTGGCAACCAGTGGCCTAGACCATGATGTCAAGATCTGGGCACCCACAGCTGAAGCTTCCACAGAACTTATAGGGTTAAAGGACGTGATTAAGAAGAATAAGCGGGAGCGGGATGAAGATAGTTTGCACCACACTGACCTGTTTGATAGCCACATGCTCTGGTTCCTCATGCATCACCTGAGACAGAGACGCCATCACCGGCGCTGGCGAGATCCTGGGGTCGGGGCTACAGATGCAGACTCTGATGAGTTTCCCAGCTCCTCAGACACTTCGGACGAGGAGGAGGGCCCGGACCGGGTGCAGTGCATGCCATCCTGA

Publications

PMID - Link Title
No publications available for this retrocopy