Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RALAP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_2) and its respective parental gene (in scaffold_m19_p_11). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_2:145997986-145998288  UCSC
Strand -
Parental Sequence RALA_x2
Parental seq. overlap 259 bp
Parental seq. overlap (%) 41.4%
Genomic Region Intergenic
Retrocopy Summary RALAP1, located on scaffold_m19_p_2:145997986-145998288, is a retrocopy of the parental gene RALA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RALA
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_11:89740644-89837471
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa RALAP1
Cow Bos taurus RALAP1
Sheep Ovis aries RALAP1
Dolphin Tursiops truncatus RALAP1
Horse Equus caballus RALAP1
Dog Canis familiaris RALAP1
Panda Ailuropoda melanoleuca RALAP1
Cat Felis catus RALAP1
Velvety free-tailed bat Molossus molossus RALAP1
Greater mouse-eared bat Myotis myotis RALAP2
Kuhl's pipistrelle Pipistrellus kuhlii RALAP1
Greater horseshoe bat Rhinolophus ferrumequinum RALAP1
Egyptian rousette Rousettus aegyptiacus RALAP1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RALAP1
ACTACTTCCGGAGCAAAGAGGGTTTCCTCTGTGTCTTCTCCATTACAGAAAAAGAATCCTTGGCAGCCATAGTTAATTTCAGGGAGTAGATTTTAATAGTAAAAGACGATCTGAATGTTCTTTCAATGCTGGTTGGTAACAAGTCATATTTAGAAGATAAAAGGCAGGTTTCTGTAGAAAAGGCAAAAACCAGAGGCAGTCCATGGAATGTTAAATATGTGAAGACATCTGTTAAAATGCAAGCTAATAATGACAGTATTTTTTTTGATTAGATGAGGGAAATTTGAGTCAGAAAGATGGAAA
>RALA_x2
ATGGCCGCAAATAAGCCCAAGGGTCAGAATTCTTTGGCCTTACACAAAGTCATCATGGTGGGCAGTGGTGGTGTTGGCAAGTCTGCTCTAACTCTACAGTTCATGTATGATGAGTTTGTGGAGGACTATGAGCCTACCAAAGCAGACAGCTACCGGAAAAAGGTAGTGCTGGATGGGGAGGAAGTACAGATTGATATCTTGGATACAGCTGGGCAGGAGGACTATGCTGCAATCAGAGACAACTACTTCCGGAGTGGAGAAGGTTTCCTCTGTGTGTTCTCTATTACAGAAATGGAATCCTTTGCAGCCACAGCTGACTTCAGGGAGCAGATTTTAAGAGTAAAAGAAGATGAGAATGTTCCATTTCTGCTGGTTGGTAACAAATCAGATTTAGAAGATAAAAGGCAGGTTTCTGTAGAAGAGGCAAAAACCAGAGCTGATCAGTGGAATGTTAACTATGTGGAAACATCTGCTAAAACACGTGCTAATGTTGACAAGGTATTTTTTGATTTAATGAGGGAAATTCGAGCCAGAAAGATGGAAGATAGCAAAGAAAAAAATGGAAAAAAGAAGAGGAAAAGTTTAGCCAAGAGAATCAGAGAAAGATGCTGCATTTTATAA

Publications

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