Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name OSBPL9P2
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr3:84227487-84228062  UCSC
Strand -
Parental Sequence XM_028833898.1
Parental seq. overlap 483 bp
Parental seq. overlap (%) 18.8%
Genomic Region Intragenic (MINDY4)
Retrocopy Summary OSBPL9P2, located on chr3:84227487-84228062, is a retrocopy of the parental gene OSBPL9. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name OSBPL9
Full Name oxysterol binding protein like 9
Also known as -
Coordinate chr1:172684896-172852759
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens OSBPL9P6
Bonobo Pan paniscus OSBPL9P2
Gorilla Gorilla gorilla OSBPL9P2
Orangutan Pongo abelii OSBPL9P2
Gibbon Nomascus leucogenys OSBPL9P4
Green monkey Chlorocebus sabaeus OSBPL9P3
Crab-eating macaque Macaca fascicularis OSBPL9P2
Baboon Papio anubis OSBPL9P2
Golden snub-nosed monkey Rhinopithecus roxellana OSBPL9P3
Dolphin Tursiops truncatus OSBPL9P3
Horse Equus caballus OSBPL9P1
Cat Felis catus OSBPL9P1
Greater horseshoe bat Rhinolophus ferrumequinum OSBPL9P1
Sloth Choloepus didactylus OSBPL9P3
Chimpanzee Pan troglodytes Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>OSBPL9P2
TGTCTTGACTAGGATGAATGTGACATCCTTACATTCCCCGATGGTATGCACGATCTATCCTCACAGTGCCCTGGGCAGAGCTAGGAGGAGAATGCAATATTAATTGTTCCAAATGGGCTGTATGCAAATATCTTCCACACCAAACCTTTCTAGGGGAGCAAGAAGCACAGAATTGCCATGAAGACTTTTTCCTCCAAATGACAAGAAATCTTTCTGCTCATTCGAAGGGAAATGGAGTGGTGTAAAGTATTCAAAGTATGCAAGGGGAAAATCCAGTCTTTACAGATACCAAGAAGTTGTCTGTAACCAAGAGGGAAGTGAGTTGGAAGAACAAGGTGAGTATGAAGCTTGCTGCCTTTAGAAGGGACACTTTCAACCTAAAAATCAGAGACTTTGATGCGGCAATTGAAGGAAAGCACTGACTTGAGGAAAGACAAAGAGCCTAAGCCTAGGAAAGGAAGAGAGAGATTCAGTGGAAGTTTAGGCTATGTCATAAACATGGGCAACAGTGGGTTGAGGATGAACCATTGACTGAAAACTCTTGGTGGTTCCAAGCCTTCTGTTGGAAAATGCAAC
>XM_028833898.1
GGTTTGGATTCAGGATTTGTTCCTAGTGTCCAAGATTTTGATAAGAAACTTACAGAAGCTGACGCTTACCTACAAATCTTGATTGAACAATTAAAGCTCTTTGATGACAAGCTTCAAAACTGCAAAGAAGATGAACAGAGAAAGAAAATTGAAACTCTCAAAGAGACAACAAATAGCATGGTAGAATCAATTAAACACTGCATTGTGTTGCTGCAGATTGCCAAAGACCAGAGTAATGTGGAGAAGCACGCAGATGGAATGATATTTTTGTGTGTGTGTTAACCATCATTGTTAATGTGAGTACTATTAATCCTGTAGATGCAATATATCAACCGAGTCCTTTGGAACCTGTGATCAGCACAATGCCTTCCCAGACTGTGTTACCTCCAGAACCTGTTCAGTTGTGTAAGTCAGAGCAGCGTCCATCTTCCCTCCCAGTTGGACCTGTGTTGGCTACCTTGGGACATCATCAGACTCCTACACCAAATAGTACAGGCAGTGGCCATTCACCACCAAGTAGCAGTCTCACTTCTCCAAGCCATGTGAACTTGTCTCCAAATACAGTCCCAGAGTTCTCTTACTCCAGCAGTGAAGATGAATTTTATGATGCCGATGAATTCCATCAAAGTGGCTCATCCCCAAAGCGCTTAATAGATTCTTCTGGATCTGCCTCGGTCCTGACACACAGCAGCTCGGGAAATAGTCTGAAACGCCCAGATACCACAGAATCACTTAATTCTTCCATGTCCAATGGAACAAGTGATGCTGACCTTTTCGATTCACATGATGACAGAGATGATGACGCGGAGGCAGGGTCTGTGGAGGAGCACAAAAGTGTTATCATGCATCTTTTGTCACAGGTTAGGCTTGGAATGGATCTTACTAAGGTAGTTCTTCCAACGTTTATTCTTGAAAGAAGATCTCTTTTAGAAATGTATGCAGACTTTTTTGCACATCCGGACCTGTTTGTGAGCATTAGTGACCAGAAGGATCCCAAGGATCGAATGGTTCAGGTTGTGAAATGGTACCTCTCAGCCTTTCATGCAGGAAGGAAAGGATCAGTTGCCAAAAAGCCATACAATCCCATTTTGGGCGAGATTTTTCAGTGTCATTGGACATTACCAAATGATACTGAAGAGAACACTGAACTAGTTTCAGAAGGACCAGTTCCCTGGGTTTCCAAAAACAGTGTAACATTCGTGGCTGAGCAGGTTTCCCATCATCCACCCATTTCAGCCTTTTATGCTGAGTGTTTTAACAAGAAGATACAATTCAATGCTCATATCTGGACCAAATCAAAGTTCCTTGGGATGTCAATTGGGGTGCACAACATAGGGCAGGGCTGTGTCTCATGTCTAGACTATGATGAACATTACATTCTCACATTCCCCAATGGCTATGGAAGGTCTATCCTCACAGTGCCCTGGGTGGAATTAGGAGGAGAATGCAATATTAATTGTTCCAAAACAGGCTATAGTGCAAATATCATCTTCCACACTAAACCCTTCTATGGGGGCAAGAAGCACAGAATTACTGCTGAGATTTTTTCTCCAAATGACAAGAAGTCTTTTTGCTCAATTGAAGGGGAATGGAATGGTGTGATGTATGCAAAATATGCAACAGGGGAAAATACAGTCTTTGTAGATACCAAGAAGTTGCCTATAATCAAGAAGAAAGTGAGGAAGTTGGAAGATCAGAATGAGTATGAATCCCGCAGCCTTTGGAAGGATGTCACTTTCAACTTAAAAATCAGAGACATTGATGCAGCAACTGAAGCAAAGCACAGGCTTGAagaaagacaaagagcagaagcccgagaaaggaaagagaaggagaTTCAGTGGGAGACAAGGTTATTTCATGAAGATGGAGAATGCTGGGTTTATGATGAACCATTACTGAAACGTCTTGGTGCTGCCAAGCATTAGGTTGGAAGATGCAAAGTTTATACCTGATGATCAGGGCAGTAGGCATAATTCAGCAACAAACAATCTTCCTTTGGGAGAAACCTGTTCACTCCCTTCTAATTACAGTGGTTCCTATCTCAGGGATACTGGACTTTCTGACGCAAATGAACAATTAAGGGGAAAAGCTTCCCTTTTCCCTCTGTGGCAGTTACgattttgatttcagtcctgagaaaaacttcaggttttgaaaaccagatgatgtcttctccttttccaAACACCACACGTTGAAAGCATTTATAAATCCAAGTCTGAAACTGCACTCTAGTTCTGCTGTTAAGATATACAACCTGTTTCTTAGTTCATATAATCTCGGGATacacacacatacacatacacacacatacatatataTAAAATATACCTGATGCCAGATTTTTTCATAAATATTCTGCCTACTGTAAATATGGGTTCCTCTGAGTTGTTTTAGAAAATTAGTGCAATGCATTAAAATCAAGTGTTAGGAAATTTCATGGTCTTACTTAAAATAACTTTTATTTTGGAACTGAACTATTATTAAATTGTATCTAATCCTGGATTACAGTTTAATTAATTATTCTTAGTGCTTCTTAAGGCTTCATAAAGTAATTTTTCCAACCTT

Publications

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