Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS27AP3
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_2) and its respective parental gene (in scaffold_m19_p_6). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_2:50134250-50134451  UCSC
Strand -
Parental Sequence RPS27A_x1
Parental seq. overlap 169 bp
Parental seq. overlap (%) 35.7%
Genomic Region Intergenic
Retrocopy Summary RPS27AP3, located on scaffold_m19_p_2:50134250-50134451, is a retrocopy of the parental gene RPS27A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS27A
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_6:35477127-35480296
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Mouse lemur Microcebus murinus RPS27AP9
Pig Sus scrofa RPS27AP1
Dolphin Tursiops truncatus RPS27AP2
Velvety free-tailed bat Molossus molossus RPS27AP18
Greater mouse-eared bat Myotis myotis RPS27AP25
Kuhl's pipistrelle Pipistrellus kuhlii RPS27AP23
Greater horseshoe bat Rhinolophus ferrumequinum RPS27AP12
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS27AP3
CTGGCAAACAACTGGAAGATGGACATACTATGACTATAATATTCAGGAGGAGTCCACCCTTTATCTTACATTGAGACTTCATGATGGTGCTAAGAAAAGGGAGGCCTCATATACCACTCCAAAAAAGAATAGGCATAAGGGAAAGAAAGGTAAGCTGGCTGTCCTCAAATACTGCAAGATGGGTGAGAATGTCAAAATCAGT
>RPS27A_x1
ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCCTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGGCGTACTTTGTCTGACTACAATATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGTCTTACACTACTCCCAAGAAGAATAAGCATAAGAGAAAGAAGGTTAAGCTGGCTGTCCTGAAATACTACAAAGTGGATGAGAATGGCAAAATCAGCCGCCTTCGTCGGGAGTGCCCTTCAGATGAATGCGGTGCTGGAGTTTTTATGGCCAGCCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACCTATTGCTTCAACAAACCAGAAGACAAGTAA

Publications

PMID - Link Title