Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPSAP19
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_5) and its respective parental gene (in scaffold_m19_p_7). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_5:128951738-128951899  UCSC
Strand -
Parental Sequence RPSA_x3
Parental seq. overlap 140 bp
Parental seq. overlap (%) 15.6%
Genomic Region Intergenic
Retrocopy Summary RPSAP19, located on scaffold_m19_p_5:128951738-128951899, is a retrocopy of the parental gene RPSA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPSA
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_7:82366558-82370938
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPSAP65
Chimpanzee Pan troglodytes RPSAP6
Bonobo Pan paniscus RPSAP6
Gorilla Gorilla gorilla RPSAP6
Orangutan Pongo abelii RPSAP2
Gibbon Nomascus leucogenys RPSAP17
Golden snub-nosed monkey Rhinopithecus roxellana RPSAP50
Dolphin Tursiops truncatus RPSAP2
Horse Equus caballus RPSAP7
Dog Canis familiaris RPSAP8
Cat Felis catus RPSAP29
Velvety free-tailed bat Molossus molossus RPSAP41
Greater mouse-eared bat Myotis myotis RPSAP9
Greater horseshoe bat Rhinolophus ferrumequinum RPSAP18
Egyptian rousette Rousettus aegyptiacus RPSAP3
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Panda Ailuropoda melanoleuca Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPSAP19
GTGGACATTGCCATCCCTGCAGCAACAAAGGGGCTCACTCAGCGGGTCTGATGTCATGGATGCTGGCCTGGGAAGTTATGCGCATGTGTGGTACCATCTCCGGTGAACACCCATGGGGTCCTGCCTGATCTCTACTTCTACAGGGATCCTGAAGAGATTGAA
>RPSA_x3
ATGTCCGGAGGCCTCGATGTCCTGCAAATGAAGGAGGAGGATGTCCTCAAATTCCTTGCTGCAGGAACCCACTTAGGTGGCACCAACCTTGACTTTCAAATGGAACAGTACATCTACAAAAGGAAAAGTGATGGCATCTACATCATAAATCTGAAGCGAACCTGGGAGAAGCTGTTGCTGGCAGCGCGCGCCATTGTCGCCATCGAAAACCCCGCTGACGTCAGTGTCATTTCGTCCAGGAACACCGGCCAGGTTTGTGGACGAGCGGTGCTGAAGTTCGCCGCTGCCACTGGAGCCACGCCCATTGCCGGCCGCTTCACTCCTGGCACCTTCACTAACCAGATCCAGGCAGCCTTCCGCGAGCCCAGGCTCCTGGTGGTTACCGACCCCAGGGCCGACCACCAGCCTCTCACTGAGGCGTCCTACGTCAACCTGCCCACCATCGCCCTGTGCAACACGGACTCTCCCCTGCGCTACGTGGACATCGCCATCCCTTGCAACAACAAGGGGGCTCACTCGGTGGGTCTGATGTGGTGGATGCTGGCCCGGGAAGTTCTGCGCATGCGCGGCACCATCTCCCGCGAGCACCCGTGGGAGGTCATGCCCGATCTCTACTTCTACAGAGACCCTGAGGAGATTGAGAAGGAAGAGCAGGCCGCTGCTGAGAAGGCCGTGACCAAGGAGGAGTTCCAGGGCGAATGGACAGCCCCGGCTCCCGAGTTCACCGCGGCCCAGCCCGAGGTCGCAGACTGGTCGGAAGGCGTGCAGGTGCCCTCTGTGCCTATTCAGCAGTTCCCTACTGCAGAAGACTGGAGCGCTCAGCCCGCCACCGAAGACTGGTCTGCAGCCCCCACCGCGCAGGCCACGGAGTGGGTAGGAACCACCACCGAGTGGTCTTAA

Publications

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