Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name H3F3BP5
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_21) and its respective parental gene (in scaffold_m29_p_20). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_21:48155811-48156222  UCSC
Strand -
Parental Sequence H3F3B_x2
Parental seq. overlap 324 bp
Parental seq. overlap (%) 77.9%
Genomic Region Intergenic
Retrocopy Summary H3F3BP5, located on scaffold_m29_p_21:48155811-48156222, is a retrocopy of the parental gene H3F3B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name H3F3B
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_20:50354360-50356146
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens H3C13
Chimpanzee Pan troglodytes H3F3BP1
Bonobo Pan paniscus LOC100988671P1
Gorilla Gorilla gorilla LOC101140122P1
Crab-eating macaque Macaca fascicularis H3F3BP1
Baboon Papio anubis LOC101010649P1
Mouse lemur Microcebus murinus LOC105863814P3
Sheep Ovis aries LOC101108931P1
Dog Canis familiaris H3-3BP4
Panda Ailuropoda melanoleuca LOC100476918P5
Cat Felis catus H3F3AP9
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>H3F3BP5
ATGGCTCGTACCAAGCAGACTGCCCGCAAGTCGACTGGTGGCAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCGGCCCGCAAGAGCGCGCCGGCCACGGGCGGCGTCAAGAAGCCGCACCGTTACCGGCCGGGCACGGTGGCGTTGCGCGAGATCCGGCGCTACCAGAAGTCCACGGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGGCTGGTGCGCGAGATCGCGCAGGACTTCAAGACCGACCTGCGTTTTCAGAGCTCCGCCGTGATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTAGTCGGGCTGTTTGAAGATACCAACCTGTGTGCTATCCATGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTGGCACGCCGCATCCGCGGGGAGCGGGCTTAAG
>H3F3B_x2
ATGGCCCGAACCAAGCAGACTGCTCGTAAATCCACTGGTGGGAAAGCGCCCCGCAAACAGCTGGCTACCAAAGCTGCCAGGAAAAGCGCTCCCTCTACCGGCGGGGTGAAAAAGCCTCATCGCTACAGGCCCGGGACCGTTGCGCTTCGAGAAATCCGTCGTTACCAGAAATCGACCGAGCTTCTGATCCGGAAGCTGCCTTTCCAGAGATTGGTGAGGGAGATCGCCCAGGATTTCAAAACGGACTTGAGGTTTCAGAGTGCCGCCATCGGTGCGCTTCAGGAAGCTAGCGAAGCGTACCTGGTGGGTTTATTTGAAGATACTAACCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGGGAGAGAGCTTAA

Publications

PMID - Link Title