Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name PRELID1P2
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr4:144314746-144315245  UCSC
Strand +
Parental Sequence NM_001261219.1
Parental seq. overlap 413 bp
Parental seq. overlap (%) 36.9%
Genomic Region Intragenic (SCGN)
Retrocopy Summary PRELID1P2, located on chr4:144314746-144315245, is a retrocopy of the parental gene PRELID1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PRELID1
Full Name PRELI domain containing 1
Also known as PX19
Coordinate chr6:174790760-174793788
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PRELID1P2
Chimpanzee Pan troglodytes PRELID1P5
Bonobo Pan paniscus PRELID1P6
Gorilla Gorilla gorilla PRELID1P5
Orangutan Pongo abelii PRELID1P4
Gibbon Nomascus leucogenys PRELID1P3
Green monkey Chlorocebus sabaeus PRELID1P3
Crab-eating macaque Macaca fascicularis PRELID1P2
Baboon Papio anubis PRELID1P2
Golden snub-nosed monkey Rhinopithecus roxellana PRELID1P1
Marmoset Callithrix jacchus PRELID1P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PRELID1P2
AGGAGGTGACCCCTGCCCAGAAGCTCCTCTCCCAGTGACTCCTGACCAAGACCAATGGGATGTCCTGCTAGACTGAGTGGCTATTTGTTGCCAATGATGCTCACCCAGTGTCCATCCTGGAGGACTCTACCGGGCACCCACAGAATCAGAAGTGACCACCTTCACCTGTAGCATCAACCATGCCAAGCTGATGGTGGTGGAGGAACAATGTATTTACTGTGTGAACTCTGAGAACTGCACTAGTCCGAAATCCTCAGGGAAGCCTGGGTGTTCTCTAGCTTATCTAGTATCTCCAGAGCTATCCAGGAACTTGGTCATGCTCTTTTCAAAAACAACATGATTGTAACTGTGAAGAGTTTTCAATATATCTTGGCCAAGCTGCCAGATGATGCACCTTCCAAAACACCTGCTGGGACAGCAAAGGAAGCCAAAGGGAAGGTAAAGGAGACAGCACTGACAGCTGTGGAGAAGGCCAAGGACCTAGCGAGCAAGGCAACCAC
>NM_001261219.1
GGCCCGGCCCCCGCGTGCCTCCCAGGCTCCGCACCCCTGATGCTGCGCGGGTGCTGAGCCCGCTCCGGCCGGGACGATGGTGAAGTATTTCCTGGGCCAGAGCGTGCTCCGGAGTTCCTGGGACCAAGTATTCGCCGCCTTCTGGCAGCGGTACCCGAATCCCTATAGCAAACATGTCTTGACGGAAGACATAGTACACCGGGAGGTGACCCCTGACCAGAAATTGCTGTCCCGGCGACTCCTGACCAAGACCAACAGGATGCCCCGCTGGGCCGAGCGACTGTTTCCTGCCAATGTTGCTCACTCGGTGTACATCCTGGAGGACTCTATTGTGGACCCACAGAATCAGACCATGACCACCTTCACCTGGAACATCAACCACGCCCGGCTGATGGTGGTGGAGGAACGATGTGTTTACTGTGTGAACTCTGACAACAGTGGCTGGACCGAAATCCGCCGGGAAGCCTGGGTCTCCTCTAGCTTATTTGGTGTCTCCAGAGCTGTCCAGGAATTTGGTCTTGCCCGATTCAAAAGTAATGTGACCAAGACTATGAAGGGTTTTGAATATATCTTGGCGAAGCTACAAGGCGAGGCGCCTTCCAAAACACTTGTGGAGACAGCCAAGGAAGCCAAGGAGAAGGCAAAGGAGACGGCACTGGCAGCTACAGAGAAGGCCAAGGACCTTGCCAGCAAGgcagccaccaagaagcagcagcagcagcagcagTTTGTGTAGCCAGCCCACCACCACCACAGCACCCCAGACAGCTAGGCTTAGCCCCTCTGCCCTCCCTCCATTGTACTTTATCATTCAAAATCAACTTCAGCCCTATCTGCTGTCTGGGTGGTGGGTTGTGGGGAGGCAGTTTGGCATCTGCAGGACAGCAAGGCACGTGATTCACATCTGTGCCAGGTCTGCTTATTCTCCCATGGGGCAGCTGAGGACCGAGGCACAGAGGTGCGGTGACTTCCCCGGGGCTCCAGGTAGCCTGCAGGTTAACTGGCGGTAAGTGctaggctgtaagccccacgagggcagggcttttggttttgttctctgaagtgtctcaatatctagcacataatagacactcaataaatacttattgaatTCAGT

Publications

PMID - Link Title