Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PRELID3BP2
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr3:153752656-153755176  UCSC
Strand +
Parental Sequence XM_015148700.2
Parental seq. overlap 2240 bp
Parental seq. overlap (%) 81.5%
Genomic Region Intergenic
Retrocopy Summary PRELID3BP2, located on chr3:153752656-153755176, is a retrocopy of the parental gene PRELID3B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PRELID3B
Full Name PRELI domain containing 3B
Also known as SLMO2
Coordinate chr10:94196032-94206180
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PRELID3BP10
Chimpanzee Pan troglodytes PRELID3BP3
Bonobo Pan paniscus PRELID3BP3
Gorilla Gorilla gorilla PRELID3BP4
Orangutan Pongo abelii PRELID3BP3
Gibbon Nomascus leucogenys PRELID3BP3
Green monkey Chlorocebus sabaeus SLMO2P6
Crab-eating macaque Macaca fascicularis PRELID3BP2
Baboon Papio anubis PRELID3BP2
Golden snub-nosed monkey Rhinopithecus roxellana PRELID3BP3
Marmoset Callithrix jacchus PRELID3BP3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PRELID3BP2
gATCTGGACTTTGGAGCACGTCTTTGACCACCCGTGGGAAACTGTTACAACAGCTGCAATGCAGAAATACCCAAACCCTATGAACCAACTGTGGTTGGAGTTGATGTGTTGGACAGACATATAGATCCCTCTGGAAAGTTACACAGCCACAGACTTCTCAGCACAGAGTGGGGACTGCCTTCCATTGTGAAGTCTCTTATTGGTGCAACAAGAATGAAAACATACACGCAAGAACATTCTGTAGTTGATCCTGTAGAGAAAACAATGGAACTTGAATCTACTAATATTTCATTTACAAATATGGTTTCAGTAGATGAGAGACTTATATACAAACTATATCCTCAGGACCCAGAAAAAACTATTTTGACTCAAGAAGCCATAATCACCATGAAAGGAATTAGCCTCAGCAGTTACTTTGAAGAACTGATGGCAAGTATGATATCCTCAAATGCTAGTAAAGGTCGAGAAGCAATAGAATGGGCAATATATAAATTAAATGCTGAGATTGAGGAACTGACAGCCTCAGTAAGAGGAAGTATAAGGACTCCAATGGCAGCACCAGCATTTGCAGAGAAGTGATCATGACAGTTGGTAGATAACATTGGGTAGCCCAGGTCTCTCCAAGCTGACTGTGTATTTATTTGTTATTTTAAAAATACAACTATATTTTAGGTAGTTTTTTTTTTTTTGATAAGCTGGTGTAAGTCTATGTAATTTTTGATCAAAATGGATTCAGGGCCTCTAAATAAAAGGGATCATCTGAAATTAATGTTGTTTGAAATTACTATCTGATTTTGAGGGTTCCAGTCTTTCTGTGAAAATTCAACAAGAACTCCTTGGAAATTGGTATTGATATTGAATCTCCTTAAGGTAGAATTTTCAAGCTTTTCCTGTACTGGAACTCCACCTGACTTTGTACCAACCCCAGAACAGAGCAGAGCTACCTCCTATAGATGCCCATTGCCCTGCTGCTGTACACTTCAACAGCTTGCACAAGGGAACTCACTTAAAAGGAGAAATTGTGTAGTTTTATAATATATTTTGAGTAAAATAATTTGCCGTGCTATAAACCACCATTCAAAACCAGTGTTTTGATTTGGTACTTAAATATTTTTGGAGTGAAAATTATCACTAAAGTAACAAGACTCCAACAAAAGTATGGTTTCATTACAGAGTACACTATTGATTTGCCAAAGTTTTGTATCTTAGTAAAGGTATTAACTTCCCTGGATTTGTACTTTGTGATTTAGCATGCTGTACCATGGGCTGGTTATATTTACTGAAAAAAAAAATAAAGTCATTACCTGGGTTTTGCAGTGCTCTAACTTAAATAGAAGAACAGCTGTTCACATCTTTTAGCATTTCACATTTGCCTAACTTAAAAATTTTCATGTGTTAAAATCATGGTTTTGTAATTGCTAAGGTATGATATGTCAGATTATTTGAATATAATCACTTTTTGAAGTAATTGTGACCAAAAAACATCTTTTTTACATGAAGGAGCTGTTTATCATTTGAAGTTACTCAAATGATGTCTTGCTCTGAAGCATAAACCCCAGGTACTTAATGTTTTTAATAATACAGTGCCACTGCAGGATTTGTGGGTGGTGGGGAAGAACAAGGATAATGGTGGGCGGAAGCTTGGCCTGAAACTAACCACTAAGTGAATTGTACTGCAGCTTTTACTTATGGGGATTCCTTATTTGGGATGTCAGAGGGCAACTTCAAATTGAAAAACCATTCAGTAAATGTACCTAGTTTTATATTTTGTAGCAGGCAATTATCAACCACTAAATAATAGCTTTGACATTTGCAATTGTTGCCTAGAGAGTATTTTAGCTACAAGGTGATTAGCTCTTGCCTTTATTTTACTGTGCTTAATGTGTGATAAACTTCTAGTCATGTTTCCTATCAAAGAAACCAGTTAATATATATACATAAACCACAGCAATAGCATAACAAACTATTTTAAACAATCATTTTTCTACTTAAAAATTGTTTAGCTTAAGAATTCTTAAGACATTAGTAAAAGCAGGTTAAATTTAATACGTTTTCTGATTCTTTTTTGTAGCCAGAGACAGTTTTTACAAGTGAAATAACATTTCAGCTAAAAAAAATCACTAAATAATTGATATTTGGTGAAAATCTACCTTGTATAATTTCTGCAAATTACACCTGTTCTGAAAAAGGTGTAATGCCCTAAAGATAAGAAATTTTTAAACAAATCCTTATCCTTTGATTTTTTAAACTCTGATCTAATGATACAATTCTATAAATTTTCATTTTCCAGTGTAGTTAGCTACCTTTTTTGAAATAGCTGGTAATTGATAGCTTTTACCTGTTAAACATAAATACACAGCAAGCAAATGTATTTAAGAGGACTAAACTGGAATAAGTGTTCATAAATGAAACCTTTGGACTATTTAATACTAAAGTTGAAAAGTAGATTCAGAAAAACTTTTGTTAATAAAAACTTTCTTTTAAGTGA
>XM_015148700.2
ggcgccatgcgccggcgcTAAGGGGTGGGGTTTCCTTGCGCTGCGCGCAAGGCTGGGGCAAAACCCGGGCCGGGATAGGGCGTAGGGCCGCGCGTCGGGACGTCCCTCGCGTCGGGCCCGACAGCGCCTGCGCACTGCGCCGCCGGCTGGAGTGCTGGGGGCGGGGCAGGGGCCGGTGTAGCCTCTGTGCCTCGTTGTCCCCTGGCGCTATCCGGACATCGCTCAGGGTGCCGGCATCATGAAGATCTGGACTTCGGAGCACGTCTTTGACCACCCATGGGAAACTGTTACAACAGCTGCAATGCAGAAATACCCAAACCCTATGAACCCAAGTGTGGTTGGAGTTGATGTGTTGGACAGACATATAGATCCCTCTGGAAAGTTGCACAGCCACAGACTTCTCAGCACAGAGTGGGGACTGCCTTCCATTGTGAAGTCTCTTATTGGTGCAGCAAGAACGAAAACATATGTGCAAGAACATTCTGTAGTTGATCCTGTAGAGAAAACAATGGAACTTAAATCTACTAATATTTCATTTACAAACATGGTTTCAGTAGATGAGAGACTTATATACAAACCACATCCTCAGGATCCAGACAAAACCGTTTTGACTCAAGAAGCCATAATCACTGTGAAAGGCGTTAGCCTCAGCAGTTACCTTGAAGGACTGATGGCAAGTACGATATCCTCAAACGCTAGTAAAGGCCGAGAAGCAATGGAATGGGTAATACATAAATTAAATGCTGAGATTGAAGAACTGACAGCCTCAGCAAGAGGAACCATAAGGACTCCAATGGCAGCAGCAGCGTTTGCAGAGAAGTGATCATGACAGTTGGTAGACAACATCGGGTACTCCAGGTCTCTCCAAGCTGACTATATATTTATTTGTTATTTAAAAAATACAACTATATTTTGGGGTTTTGTTTTTTGTTTTTTTATAAGTAGGTATAAGGCTATGTGACTTGATCTAAAAGATGCAGGGCCTCTAAATAAAAGGGATCATCTGAAATTAATGTTGTTTGAAATTACTATCTTGATTTTGAGGGTTCCAATATTTCTGTGAAAACTGAACAAGAACTTCTTGGAAACTGGTATTGATATTCAATCTCCTTAAGGTAGAATTTTCAAGCTTTTCATACATTGGAACTCCACCTGACTTTGGACCAACCCCAGAACAGAGCAGAGCCACCTCCTATAGACACCCATTGCCCTGCTGCTGTACACTTCAACAGCTTGCACAAGGGAGCTCACTTAAAAGGAGAAATTGTGTAGTTGTAAAATATTTTTTGTGTAAAATACCTTACTCTGCTATAAACCACCATTAAAAACCAGTGTTTTGATTTGGTACTTAAATATTTTTGTAGTGAAAAATTATCACTGAAGTAACATGACTCCAACAAAAGTATGGTTTCATTATAAAAGAGTACTGTATTGATTTGCCAAAGTTTTGTGACTTAGTAAAGGTATTAACTTCCTTGGATTTGTACTTTGTGATTTAGTATGCTGTGTCGTGGGCTGGTTATGTTAACCGAAAAAAATAAAGTAATTACCTGAGTTTTGCAGCGCTCTAACTTAAACAGAAGAACAGCTGTTCACATCTTTTAGCATTTCACATTTGCCTAACTTAAAAATTGCCATGTGTCAAAATCATGGTTTTGTAATTGCTAAGGCATATGTCAGGTTATTTGAATATAATTACTTTTTGAAGTAATTGTGACCACAAAACATCTTTTTTACATGAAGGAGCTGTACATCATTTCAAATTACTCAAATGATGTCTTGCTCTGAGGCATAAACCCCAGGTACTTAGTGTTTTTAATAATATGGTGCCACTGCAGGATTTGGGGGTGGTGGGGAAGAACAAGGATAATGGTAGGGGGAGGCTTGGCCTGAAACTAACCACTACGTGAATTGCACTGCAGGTTTTACTTATGGGAATTCCTTATTTGGGATGTCAGGAGGGCAGCTGCAAACTGAAAAACAATCTAGTAAATGTACTTTGTTTTATATATTGTAGCAGGCAATTAACCACTAAATAATAGCTTTGACATTTGCAATTGTTGCATAGAGTATTTTTGTTAGAAGATGATTAGCTCTTGCCTTTATTTTACAGTGCTTAGTGTGATAAACTTCTAGTCATGTTTTCTATCAAAGAGACCAGTTAATATATGTACATAAACCACAGAAATAGTATAACAAACTATTTTTAAATTATCGTTTTCCTACTTAAACATTGTTTAGCTTAAGACTTCTTAGGACATTTGTAAAAGCAGGTTAAATTTAATAAGGTTTCTGATTGTTTTTTTGTAACCAGAGATAGTTTTTACAAGTGAAATAACATTTCAGCTAAATAAAATATCGCTAAATAATTGATACTTGATGAAAATCTGCTTTGTATAATTTCTGCAAATTATCCTTGTTCTGAAAAAGGTGTAATGACCTAATGATAGAGATTTTTAAATCCTTATCCTTTGATTTTTTTTAAACTCTGACCTAATGATAAAACTCTATAAATTTTCATTTTCCAGTGCAGTTAAACATAAATGCACAACAAGCAAATGAATTTAAGAGAACTAAACTGGAATAAGTGTTCATAAATGAAACCCTTGGACTATTTAATACTAAAGTTGATATGTGGATTAAGAAAAACTTTTGTTAATAAAAACTTTCTTTTAAGTGA

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