Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PRXL2CP2
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chrX:62052018-62053166  UCSC
Strand -
Parental Sequence XM_001106503.4
Parental seq. overlap 805 bp
Parental seq. overlap (%) 65.3%
Genomic Region Intragenic (ZC3H12B)
Retrocopy Summary PRXL2CP2, located on chrX:62052018-62053166, is a retrocopy of the parental gene PRXL2C. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PRXL2C
Full Name peroxiredoxin like 2C
Also known as AAED1
Coordinate chr15:111193178-111207102
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PRXL2CP1
Chimpanzee Pan troglodytes AAED1P1
Bonobo Pan paniscus PRXL2CP1
Gorilla Gorilla gorilla PRXL2CP1
Orangutan Pongo abelii AAED1P1
Green monkey Chlorocebus sabaeus AAED1P2
Crab-eating macaque Macaca fascicularis AAED1P2
Baboon Papio anubis PRXL2CP2
Golden snub-nosed monkey Rhinopithecus roxellana PRXL2CP2
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PRXL2CP2
GCCCCTGTCCAGGCCCTGAGTGGCCCTGAGCATGGGCAGTCCCTGGTGGCTGCCATAGCCGAGCTACCAGTGCTGGACTCCCACGGGCAGTGGGTGCCATTTGGAGCTCTCCTCCGGGAGCGCCGCACCATGGTACTGTTTGTGCAGCATTTCCTGTTTTACATTTGCAAGGAATATGTAGAGGCTCTGTGAAAAATCCTGAAGAGTTTCTTACAAGAAGCAAATGTCATCCTTATAGTGATTGAACAGTCATCCTACCATCCTATTGAGCCTTTTTGCAAACTGCCTGGATATTCTCATGAAATCTATTTCATCCTGAGAGGGAAATTTATAAAAGATTGGGAATGAAAAGAGGTGAAGAAATGGCCTCATCAGGACAGAGCCCCCACGTAAACTCTCAGGAAGCCTTTGGAGCTTGTGGTGGGCAGTGACTGGCCCTCTCTTTGATTTTCAAGGAGATCCAGCTCAGCAAGGTGGAACTCTCATTTTAGGTTCAGGTAACAACATCCATTTTATACACCATGAAAGGAATACGTTGGATCACAAACCTATCAACTGTTTTACAGCTTGTAGGAGTTTAACATGTGAACTTTACAAACAGACTTTCAGTTATCCATGTGTGAGTTAACATGGTATCTGCAACTTTCGACTGGACCTCCTGGAATGTGACCTTCAATGCTGGGGTGTAATATCCCTGTGCAGTGTCTAACCTGCTGTCCCTTTCCAGCCTTTGAGGATTTAGGAAAGCATAAAGAGGCCTTGAACCAGTTGAACTGCATGCTGAGAAGCATCAGTTGTCAAAAATATGATAATACTTTCATTTTATAGCTTTTAAAATTTTATGCAAAATAACAAATATGGATATACAAAATATAACTTTAAAAAATTATAAAATCATAAATATAATTTCAATCATTTt
>XM_001106503.4
CGGACCCAGGCCCTTGGCCGCCCCGCGTCATGGCCGCGCCCGCCCCGGTCACGCGGCAGGTTAGCGGCGGCACCGCCCCGGTCCCGGCCCCGAGCGGCCCCGACCGTGGGCAGCCCCTGGCGGCCGCCGTGGCCGAGCTGCCGGTGCTGGACGCCCGCGGGCAGCGGGTACCTTTCGGCGCGCTGTTCCGGGAGCGCCGCGCCGTGGTGGTGTTCGTGCGGCATTTCCTGTGTTACATCTGCAAGGAATACGTAGAGGATCTGGCCAAAATCCCCAAGAGTTTCTTACAAGAAGCAAATGTCACCCTTATAGTGATTGGACAGTCATCCTACCATCATATTGAGCCTTTTTGCAGACTGACTGGATATTCTCATGAAATCTATGTCGATCCTGAGAGAGAAATTTATAAAAGATTGGGAATGAAAAGAGGTGAAGAAATTGCCTCCTCAGGACAGAGCCCGCACGTAAAATCAAATCTACTCTCAGGAAGCCTTCAGAGCCTGTGGCGGGCAGTGACTGGCCCGCTCTTTGATTTTCAAGGAGACCCAGCTCAGCAAGGTGGAATCCTCATTTTAGGTCCAGGTAACAACATCCATTTTATACACCGAGATAGGAATAGGTTGGATCACAAACCTATCAACTCTGTTTTACAGCTTGTAGGAGTTCAGCATGTGAACTTTACAAACAGACCTTCAGTTATCCATGTGTGACTTAAAATGCAATCAGTCACTTTCAGCTGGACCTTCTGGAATGTGACCTTCAACATCCTCGTGCAGTGTCTAACCTGCTGTCCCTTCCCAGCCTTTGAGGAGTTAGGGAAGCATAAAGGGGGCTTGAACCAGTTGAATTGCATGCTGGGAGGCATCAGTTGTCAAAAATGTGATATATACTTCCATTTTATAACTTTTAACATTTTACACAAAATAACAAAAATGAATATACAAAATATAACTTTAAACCTATAAAACCTATAAAATCATAAATATTTAAATTATTTtacattatggtatattcagtcaatgaaagatttttttggcaatgtaaattctgatgaatatataaagggacgggagagcagcagaagaccattgtattcagtgaagaagacaagatatcaaattctgtcaacaatgtaacttcatttttatatgtatatatttgtatttttgtatgcttaggaaaaagacaataaacactgaaatgctgccagtaggta

Publications

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