Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RNF168P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_1) and its respective parental gene (in scaffold_m29_p_2). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_1:39685749-39687630  UCSC
Strand -
Parental Sequence RNF168_x1
Parental seq. overlap 1532 bp
Parental seq. overlap (%) 37.3%
Genomic Region Intergenic
Retrocopy Summary RNF168P1, located on scaffold_m29_p_1:39685749-39687630, is a retrocopy of the parental gene RNF168. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RNF168
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_2:51190461-51217607
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa RNF168P1
Cow Bos taurus RNF168P1
Sheep Ovis aries RNF168P2
Pale spear-nosed bat Phyllostomus discolor RNF168P2
Velvety free-tailed bat Molossus molossus RNF168P1
Greater mouse-eared bat Myotis myotis RNF168P3
Kuhl's pipistrelle Pipistrellus kuhlii RNF168BP3
Egyptian rousette Rousettus aegyptiacus RNF168P2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RNF168P1
GTATTTAATGCTCCCAATCACTGAATTCTGGTAGACTGCTAGGCGTAATATTTAAACACAAAACTGTTAATTTGCTGTCTCCGAACTTGGACTGGAAATACTATTCTTTCTCTTCCAGGTGTTGATGTTGAATATGCCTTGTTAGCATAGTAGAATGGCTGAACCTAAGGACATGATCCCTTCTTTGTCCGAAATCCAGTGCAAGATCTGTGTGGAAATCCTGATTGAGCCGGTAACACTGCCTTGTAATCACACGGTCTGTAAGGCATGCTTCCAGTCGATTATTGAAAAGTCAAATTTATGCTGTCCTTTCTGTCGCCGCTGGATCTCTTCATGGGCCCGGTACCATACCCCAAGAAATTCTCTTGTCAATATGGAACTGTGGGAGAAAATTCAAAAACACTATCCAAAGGAATGTAAACTTAGAATCTCTGGGCAAGAATCAGAAGAATCCATTGATGACTTTCAGCCAGTTCGTCAGTTAAGTGAACCAGACGAATTGAGAAGAGAATATGAAGAGGAGCTAAGCAAAGTGGAGTCAGAGCGAAGAGCCAATGAGGAAAAAGAAAACAAAGCCAGTGAAGAATACATACAGAAATTATTGGCTCAAAAGTGATGAAGAACTGGCAAGAAATATAAGCATTAATATTAACAATACCTGTGAAGACAGTGTCTTGGCTTCTCCTGGGAGTTCCAGAAAATCTGATCCAGTCACAACCAAGTCACAAAAGAAAAGAAAAAACAAAGAAATTGATACTGGAGATATTCAGGAGTATGTGTCACCTAAATCTCAGTTTGAGTCAGCATCACAGTCTGAAGAACAAGAAGGCAGAAAAAACTCCATGTTTAAGGAAACTGACAGTAGTGATATAAAGAGCCCTAGGTGGAAAGACACAGAAATTGAAGAAGATATGCCAACACTTTCTTCTCAAATATGCCTTGAAATTCAAGAACAAGGAGCAAAGTCTTCAATAGAGTCAACTATGCCTCAGTTATGTACAGATGATACAGAAAGATGCCTTGAAGGAAAAGTCAAAATGAGACCAAGCACGCATGACAAAGAGTCATGTGTCATAAGTCATGAGGGACCTAAAGCCAGAGTTTCCTATTCAAGAGAATCTGCAGTTAAGACTTTTGGCAAAACAGAGAGTGGGTGCACTAAGTCAGGTATGACACAGATCAGAAATGAAGAGTCTCACCTAATGATAAGTAATGAAGGTATTTCCAAAAGAAAAAAACAGGAATCTTTGTTTGAAACCATTGGGGATCCATGCTTTTCTGCAAAAAGAGGAAACACATTCCCCAAATCTTCCTCAGGCCAAGAGGAAGCAGAAGACCCCTTCACCCCAAAACTGTTACACTTGGAACATCTATTTTTTGAAAGACGTAAACAAGAAGAACAAGATAGGTTATTAGCATTAGAGCTTCAGAAAGAGGTGGATAAAGAAATGAAGCCAAGCCAGAAAAAGGGATCTGGAAGTGAGTATCAGTTACATGCTACATTCCCATTTCCAGAGAGAATAAGTGGGGAGAGGAAGAATTCCAAAGATAGCAACTCCAAAAGACAAACTGATACAGAACATTCAAAATCTCAGAGGGGCTCAAAAAATTAAAATTGGCAACCTTTTTTTAACATCCAGTTGTAGCATTCAGTTAATGTTAATGAAAAATGGCAAATTCTAGTAGAGATTATTGTAATATATCTAAAAGTACTCATTCCTTACAGCCTAGTAAGGCACCACAGAAAAGTATTTTTCATATGTTTCAGAAATACCCAAAGTAATGCATGGGTAAAGGGAGTGTTTAATAATCTACTAAAG
>RNF168_x1
GACTGATACAGGGGTAAGGAGCGCCAGGAAACGACATGAGACACCGAAAAGCTGGAACGCTCGGGTTCGTATGCTGCCCATACAGCAACGAAAAAACGGAAGACCTGCTTTAGTGAAGCCAGGCGTCCGGGCGGAAGCAGCGTCTTTCCCGGAGCGGTGGTTTTGGCGGGTGTGTGCCTAGACAGCCTTGGGCTTGGCTGCGGGCAGCTGAGGGAGCATCTTCACCTGGTGAGAGGGAGGAGGGGAACTTGGCGCATACCTCCCGCCGCACCAGAGCACCGGAACCCAGCGCCCGCACTGCGGAAAAGGTTCTCTTAATGCCTCGGAACAGCCGAGGTCTTCCGAGGGAAACCTTTATTTTCTTATCCTACGTTTGTCCTAAACGTGGACAAATTGCACCGCCTTCCAGGGAAGTACTGTTTACCTGACCCGCAGAGCGCCTTTTGCTTCAAGACGTATTTGATGTTTCCAATCTCTGAATTCTGATACGCTGCTGGGCACAGTATTTAACACAAAACTGCTAATTTGCTTTCTCATTAATTGGGCCGGAAATACTATTCTTTGCCTTTTCGGGTGTTGATGTTGAATATGCCGTTTTAGTATATTAAAATGGCTGTGCCTAAAGACGCCATCCGTTCCTTGTCGGATTGCCTATGCGGGATCTGCGTGGAAATCTTGATCGAGCCCGTAACACTGCCTTGTAATCACACGCTCTGTAAAGCATGCTTCCAATCGACTGTCGAAAAGGCGAATTTATGCTGTCCCTTCTGTCGCCGCCGGGTCTCGTCGTGGACTCGGTACCATACCCGAAGAAATTCTCTTGTCAATAGAGAACTGTGGGAGATAATTCAAAAACACTATCCAAAGGAATGCAAGCTTAAAGCATCTGGGCAAGAATCAGAAGAAATCGTTGATTGCTATCAGCCAGTTCGTCTGTTAAGTAAACCTGGGGAATTGAGAAGAGAATATGAAGAGGAGATAAGCAAGGTAGAGGCAGAGCGGCGAGCCAATGAGGAAGAGGAAAACAGAGCCAGTGAAGAATACATACATAAATTATTGGCAGAGGAGGAGGAAGAGGAAAAAAGACAAGCCGAGAAAAGGAGAAGAGAGATGGAAGAACAGCTGAGAAGTGATGAAGAATTGGCAAGAAGGCTAAGCTTTAATATTAACAATTTCTGTGAGGGAAGTGTCTTGGCTTCTCCTGTGAAGTCCAGAAAATCTGATCCAGTCTCAACCAAGTCGCAAAAGAAAAGTAACAAACAAATAAGTACTGGAGATATTCAGAAGTATTTGTCTCCTAAATCTCAATTTGGGTCAGCACCACAGCCTGAAGTTGTACAAGAAGGCAAGACACATTCCATGACTAAGGAAACTGACAGTAGTGATACAAAGAGCACCACTGGGCAAGACACAGAAATTGAGGAAGATATGCCAACACTTTCTCCTCAAATATGCCTAGAAATTCAAGAACAAGGTACAAAGTCTTCAATAGAATCACCTATGCCTCCGTTATGTGCCAATGGTACAGAATGGTACCTTGAAGGAGAAGTCAAAATGAGACCAAGCAGTCACGATAAAGAGTTATGTGTCATAAACCATGAGGGACCGAAAGCCAGAGTTCCCTCCTCTAGAGAAGCTGCAGTTAAGCCTTGTGGCAAAACAGAGAATGGGAGCACTATATCAGATATGACACAGATAATTGGAAATAGCACAGCTGAGACAGAAAATGAAGAATCTCGTCTACTGATTAGTAAAGAAGATATTTCCAAAAGAAAAAACCAAGAATCATCTTTTGAAGAAGACAGGGATCCATGCTTTTCTGCAAAACGAAGGAAAATGTTCCCTGACGCTTCCTCCGACGAAGAGGAAGCAGAAATTGACTTTACCCAAAAACTGTTAGATTTGGAAAATCTACTTTTTGAGAGACATAAACAAGAAGAACAGGACAGGTTATTAGCATTACAGCTTCAAAAAGAGGTGGATAAAGAACAAATGAAGCCAGACCGGCAAAAAGGATCCCCTAATGGGTATCAGTTACGTGCTACGCCCTCACCTCCAGACAAATTGCTAAATGGACAGAGGAAGAATTCCAAAGATAGAAACTTAAAAGGACAAACTGAGCATTCAAAATGTCAGAGAGGCTCAAAAAATGAAGATTGGCAACCTTTTAAGAAGAGCCAGTTGAAACATTCAGTTAATGGAAGAAAGATGCCAAATTCTACTAGAGATAATCGTAACGTATCTAAAAGTGCTCATTCCCTACAGCCTAGTAAGTCACAGAAAAGTATTTTTCAGATGTTTCAGAGATATACAAAGTAATGCATAGGCAAAGGGAGTGTTTTATAATCTAGTAAATCTGCTCTGTGGACACACTTATTGTCCTTAACTAAAGGACTGTGCGAGTACAAGGGAGGAATGAATATACAACTGTGTTTCTGTCAAAGTCAGTGATAAGCAAGAGTCCTGATCATTTATTAATAACTGCTAAGTCTGGCAATCATTAATAGATAATAGATATAAAAATGCCTGGGCCAACTCCCAAGAAATCTTCAAATGCCATTCTCTTTCCCCAAAAAATGCGTTTTATTGCCTTTGCTCACCTTTTTGTCCTGACTAGTAATCAAAGCAAGATTATAATTATACTACACAAAGTAGTTAAGGAATCCAGGTTTCAAATCTAAGTTTTCTTGCTACTTTGCCATGTACGTGTAGAGTACTTGAAATTCATCTTCCATAACACTAAAGTAATCTAATTTCCATTTCTTAAATTATTTTAAGCATTATAGCATCTTCTTTTATTTAAAATAGGTTGGGATCAGCATGAAATCTGAAAAATCAGAGCGTTCTGGAAAATTAGGGTTAGTTAGGAAACTAGACTCTTGATGCAAAAGGAATTCTGAGTTGGGATGAGGCTGAGCGGAGCAGACTGATAACTTAGAAGCACTGGAACTGAGTGGGTGGTTAGGGTCCAGGATAGAGTAGTAGGTATAGTTTGGCAGAGCATTCTCCCTCCTCCTTTTTGTGTTAAATGACACAAAGTATTTGGGTTTTACAGCTTTTCACACCATAGTAGCTGGTGTCAAAATCAAAATTAGTTACTAAATTACCTGAAATTTTGGAAAAGCATATTTCTATTAATCTGCTATTCCAGAAAGAAAATGGGAATTTACTATAGGAGTTATATCACGATATCCTATGTTATGGAACCTATGACATAAATAACCATGTGTTTATTTCCTTATATCATCATTTGTATTGATGGTGACTTCTATTTGTGTTTATGGACAGAAATAGAAAGTATGATACTTGGATTTTGCTTATATTACCCCTGGAAGTTCAATCAGAGGCAATGATTTCATTTTGTGAAATTTAACTTAGAGACTATTAATCTTTGTTTCATTAATATGATCAGCTTGGAGCAAACAGTTTTAGCAGTATTTCTACTGATGTCTAGTTACCGTCCTTGTAAGCTAAAAATACAATAAAATGTCCTAGAGCTAATTCTAGCTTAAATTTGTCAATATTTTTATATACTGAGATTTTTTTCCCTCCAAATTTTATAACTGAAATTCTGTTAATTTTTGCATATTTGATGGCAAATATTTAAATACTGATTGAATGGGTAATTATGGGTAGAATTCTCTAGTGCTAATTTAAAATTTAGTTTGCCCTTTCTCAGAATAAAGTGTCCTCTGAGTAATGATTGAGCTGAAATGAAGTACAGTCAGAAACTAACCAAATTTGTGTAAAATAGACTAAAATCTACCTTCTCATCAAACCGATATTTTTCTGAGAGCAATTTCACTTTACATTTCAGGGTAGACATTGTTGGAACTTCTCAAATTAAAAGTTATGTAATTAAATCTTCCTGGAATAGTCCATGACCAAAAAGGGGGGGAGAAAATAGTGTGATGTAGTTAGGATTTATATGTTTAACCACTTACTTGTCTGTGAAGAAGTCTTCCTGACTAAAGTTGGTTTTAAGATAAATTTTAATTTCTCTATTAGTCTTTCTGATAGTCCCACCATGTGTGCTTTTTTGTTAGAAACTAATAAATGATTTGTGTCAGTCATTA

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