Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL12P40
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_22) and its respective parental gene (in scaffold_m29_p_12). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_22:40365483-40365720  UCSC
Strand -
Parental Sequence RPL12_x1
Parental seq. overlap 202 bp
Parental seq. overlap (%) 40.5%
Genomic Region Intergenic
Retrocopy Summary RPL12P40, located on scaffold_m29_p_22:40365483-40365720, is a retrocopy of the parental gene RPL12. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL12
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_12:76958222-76961991
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL12P36
Chimpanzee Pan troglodytes RPL12P36
Bonobo Pan paniscus RPL12P33
Gorilla Gorilla gorilla RPL12P35
Orangutan Pongo abelii RPL12P42
Gibbon Nomascus leucogenys RPL12P6
Baboon Papio anubis RPL12P42
Horse Equus caballus RPL12P2
Dog Canis familiaris RPL12P8
Cat Felis catus RPL12P51
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL12P40
CCACCCAGAGACAGAAAGAAGCAGAAAAACAGTAAACATAGCGGAAATAGCACTGTTGATGAGATTGTCAGCATTGCCTGACACATGTGGTACTGATCTTTAGCCAGAGAACTCTCTGGAACCATTAAAGAAATTCTGGGGACGGCCCAATCTGTGGGCTGCAATCTTGATGGCTGCCATCATCATGATGTCACAGATGACATCAACTCGGATGCGGTTGAATGCCCAGCTAGTTAAG
>RPL12_x1
ATGCCGCCAAAGTTCGACCCCAACGAGGTCAAAGTCGTATACCTGAGGTGCACCGGTGGGGAAGTGGGTGCCACGTCTGCCCTGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTCCAAAAAAGGTTGGCGATGACATCGCTAAAGCAACCGGTGATTGGAAGGGTCTGAGGATCACAGTGAAATTGACCATTCAGAACCGACAGGCCCAGATTGAGGTGGTACCTTCTGCCTCTGCCCTGATCATCAAAGCCCTCAAAGAACCACCAAGAGACAGAAAGAAGCAAAAAAACATTAAGCACAGTGGGAATATCACTTTTGATGAGATCGTCAACATTGCCCGACAGATGCGGCACCGATCTTTAGCTAGAGAACTCTCTGGAACCATTAAAGAGATCTTGGGGACGGCCCAGTCTGTGGGCTGCAATGTTGATGGCCGCCACCCTCATGACATCATAGATGACATCAACAGTGGTGCCGTGGAATGCCCAGCCAGTTAA

Publications

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