Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS27AP2
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_2) and its respective parental gene (in scaffold_m29_p_14). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_2:50877490-50877888  UCSC
Strand -
Parental Sequence RPS27A_x1
Parental seq. overlap 360 bp
Parental seq. overlap (%) 76.3%
Genomic Region Intragenic (TNK2)
Retrocopy Summary RPS27AP2, located on scaffold_m29_p_2:50877490-50877888, is a retrocopy of the parental gene RPS27A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS27A
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_14:32482754-32484840
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS27AP24
Chimpanzee Pan troglodytes RPS27AP14
Bonobo Pan paniscus RPS27AP14
Gorilla Gorilla gorilla RPS27AP16
Orangutan Pongo abelii RPS27AP17
Gibbon Nomascus leucogenys RPS27AP19
Green monkey Chlorocebus sabaeus RPS27AP19
Crab-eating macaque Macaca fascicularis RPS27AP9
Rhesus Macaca mulatta RPS27AP9
Baboon Papio anubis RPS27AP8
Pale spear-nosed bat Phyllostomus discolor RPS27AP6
Velvety free-tailed bat Molossus molossus RPS27AP7
Greater mouse-eared bat Myotis myotis RPS27AP6
Egyptian rousette Rousettus aegyptiacus RPS27AP3
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS27AP2
GAGGTTGAACCCTTAGATACAATAGAAAATGTAAAGGCCAAGATCCAGGGTAAGGAAGGAATTCCTCTTGATCAGACTGATCTTTGTTGGCAAGTAACTGGAAGGTGGACGTACTTCGTCTACAGCTTTCCAAAGGAGTCCACTGTTTATCTTGTGTTGAGACTTTGTGGTGGTGCTAAGAAAAGGAAGACGTTTTACACTACTCCCAGGAAGAATAAGCAAAAGAGAAAGAAGGTTAATATTACAAGGTTGATGAGGATGGCAAAATCAGTTGCCTTCGTCGGGAGTGCCCTTCATATAAATGTTGTGCTGGAGTTTTTATGGACAGCCATTTGGACAGACATTTTTGTGGCAAATGTCATCTGACCTATTGCTTCAACAAACTGGAAGACAAGTAAT
>RPS27A_x1
ATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGGCGCACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGTCTTACACCACTCCTAAGAAGAATAAGCATAAGAGAAAGAAGGTTAAGCTGGCTGTCCTGAAATACTATAAGGTGGATGAGAATGGCAAAATCAGTCGCCTTCGTCGGGAGTGCCCTTCAGATGAATGTGGTGCTGGAGTTTTTATGGCCAGCCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACCTATTGCTTCAACAAACCAGAAGACAAGTAA

Publications

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