Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SELENOOP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_12) and its respective parental gene (in scaffold_m29_p_4). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_12:55572173-55573354  UCSC
Strand -
Parental Sequence SELENOO_x1
Parental seq. overlap 531 bp
Parental seq. overlap (%) 24.5%
Genomic Region Intragenic (COL15A1)
Retrocopy Summary SELENOOP1, located on scaffold_m29_p_12:55572173-55573354, is a retrocopy of the parental gene SELENOO. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SELENOO
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_4:98703120-98743185
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus LOC103238033P1
Mouse lemur Microcebus murinus LOC105878114P1
Cow Bos taurus LOC100297097P1
Horse Equus caballus LOC100065515P1
Greater mouse-eared bat Myotis myotis LOC00264P2
Kuhl's pipistrelle Pipistrellus kuhlii SELENOOP1
Egyptian rousette Rousettus aegyptiacus SELENOOP1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SELENOOP1
GCTCAGGTTCTGGAGGCGTACCCTGTTCTTTATTACAGGAGATTTGGAGGTTGCTCACAGCCAAGTTTGGATTACTTGGAGAAAGGGAAGGTGATGATTTGCATTGCTTTTACATATCATGGAAAAGACAGAAGGTGGTTTACAATGCAAACAATGAGATTTCGGTAGCTCAGTGAGATTACTCATAACCGGTTATGAGTTGAACATTCCTCAGCAATTCTGGGCACTGAGGAAAATTTCCAAGCACAAACCCTTTTCTACTTGGAGGTCTTGGCACCTTTTGAGACTGAAGAAGACAATGAATGATTCCGGTTGTGAAAGAAGGAAAAGAATGACAACTGTTAATCCTAGATTTGGGCTGAAGAACTGGATGCCAGAATCTGCAGTGCAAAAAGCAGGAAGGAATTTTCCAGAGGTCCATCTCCAGCCAGTTTTTCACCTATTCCTTCATGGGCTAAGAATCTCAGAGTTAGCTGCTCATCTTAATTTGGGAAAAATAAATTAAGGAATATTTCTATCATGGAACTCAACATAGAATAATCTATTTGATAAATTCTTAATGATCATCCACATTTTGGTGACAATCCCACATTTGAAAATTATGATTATATATAACAATATTTTTTT
>SELENOO_x1
GCTGACTCAGCGGGGACCGCCcggcggtccgaggcggaaggggcgcgcggcggcggcTGGAGCCCTTCGGCCCTCTGCTGGCCGCCCGGCCGGGGAGAAACTAACCGTGACCTGCCACCTCTGGAGCCTCTTTCCCGAAGCCTTCCCGCCGCTTGCGGGGAGCCAGTAGCTCCAACAATCAGAGCGAAATGGACTTTGGAGGGACCAGCTGTTAGCAAGAAATGTCACAGTGCGCCAGACTGCCAGTCACTGACTTTTTGTTCTGTGTATTCTGGCAGAAATATGACTCAGAGAAGCGGGTTCCCGTTTTGCTGCCTGACACGGAGGCTGCGGATTCCGCAGCTGCTTCTCTTGTGTGTGACCTTCTCTTGTGTGTGTCACGCTCTCTTCTGCTTCTTAGTACAACCTGGCCTTGAAGGAAGTACCAATCTTTTTCATCTTCTCAGTAACAAGTCAAACCAGGAGCAGGGCTATTGTGAAACGGAAGCTAGATTAGCCTCGTCTCTCGACTTTTGGACTCTCTCCTCTGAAAACCTTATAGCTGTGTTGCCAGTTGATCCTGTTAAAGAAAATTATGTTCGTAAAGTGAAAAACTGTATTTTTTCAATTGCCTTCCCTACGCCTTTCAAATCAAGAGTACGTCTTGTAGCAGTCTCAAAGGAAGTTTTAGAAGATATTTTGGATCTTGATTTATCTGTCTCAGAAACAGATGCTTTTATCCAGCTTGTCAGTGGTGAAAAGATAGTGTTTGGATCCATTCCATTGACTCACAGATATGGTGGCCACCAGTTTGGGATATGGGCAGATCAGCTTGGCGATGGCAGAGCCCATCTTATTGGAATTTACAGGAACAGGCAGGGTGAAAAATGGGAGCTCCAATTAAAAGGCTCAGGAAAGACCCCATATTCCCGAAATGGTGATGGCAGAGCTGTACTTCGTTCCTCAGTGAGAGAATTTTTGTGTAGTGAGGCTATGCATTATCTTGGAATTCCAACTAGCAGAGCTGCAAGTCTGGTTGTAAGTGATGATGAAGTATGGAGAGATCAGTTCTACAATGGAAACATTGTGAAAGAACGAGGTGCAGTAGTGCTGCGGGTTGCAAAATCATGGTTTAGAATTGGATCGTTAGAAATTTTGTCTCATTATGGTGAACTGGATTTACTAAGGTCATTATTAGATTTCATCATACAGGAACACTTCCCCTCAGTAAATGTCCAAGAACCTAATAGATATGTGGATTTTTTTTCCATTGTGGTATCTGAGACAGCACAACTTATTGCCTTGTGGATGTCTGTTGGTTTTGCTCATGATTTTGTACCAAACACATCTGATGATGAAAGAAGATATAAAATAGGAAATCAGGCTAATATTGGGATGTTTAATTTAAATAAATTATTACAAGCTCTAAACCCATTACTTGACCGAGGGCAAAAGCATCTTGCTGCTCAGATTCTTGAGGGGTATCCTGTTCTTTATTACACAAGATTTACAGAATTGTTCAAAGCTAAATTGGGATTACTTGGAGAAAGGAAGGGTGATGGTGATTTAATTGCATTTCTCTTACATCTCATGGAAAAGACAGAAGCTGATTTTACAATGACCTTTCGGCAGCTCAGTGAGATTACTCAAAGCCAGTTACAGGAACTGGACATTCCTCAGCAATTCTGGGCACTGAAGATGATTTCAAAGCACCAACTCTTTCCTGCCTGGGTGTCCCAGTACCTTTTGAGACTGAAAAGTAACATGAATGATTCAGATTCTGAAAGAAGAAAAAGAATGACAACTGTTAATCCGAGATATGTGCTGAAGAACTGGATGGCAGAATCTGCAGTGCAAAAAGCAGAAAGGAATGATTTTTCAGAGGTCCATCTCCTCCAGCAAATTCTTCAGCATCCTTTCCAGAAGCATTCTGCAGCTGAGAAAGCAGGCTACTCCTCACCTACCCCTTCTTGGGCTGAAGGTCTCAGAGTTAGCTGCTCATCTTAATTTGGAGAAAATAAATTAAGGAATACTTCTATCCTTGAACTCAACATTGAAAAATCAACTTGATAAATTCTTAATGACATCTACATTTTGATGGCAATCCTGAATTTCAAAATAATGATTATATATAAAAATATTTTTTAATCAAATAAACTGGGCCTGTTCTTTGG

Publications

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