Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL13AP12
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr10:20876959-20877437  UCSC
Strand +
Parental Sequence XM_015124373.2
Parental seq. overlap 401 bp
Parental seq. overlap (%) 33.9%
Genomic Region Intergenic
Retrocopy Summary RPL13AP12, located on chr10:20876959-20877437, is a retrocopy of the parental gene RPL13A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL13A
Full Name N/A
Also known as -
Coordinate chr19:49442936-49447649
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL13AP42
Chimpanzee Pan troglodytes RPL13AP30
Bonobo Pan paniscus RPL13AP32
Gorilla Gorilla gorilla RPL13AP27
Orangutan Pongo abelii RPL13AP30
Green monkey Chlorocebus sabaeus RPL13AP16
Crab-eating macaque Macaca fascicularis RPL13AP12
Baboon Papio anubis RPL13AP21
Golden snub-nosed monkey Rhinopithecus roxellana RPL13AP19
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL13AP12
CTCTCCTGGGCTTCCTGACGGCCATGGTGGCTAAGAAGGCCCGAAGGTGGTGGTCATACACTGCGGGGACATCAACGTTTCTGGCAATGTCCATAGAAACAAGTTGAAGTACCTGGCCTTCCTCCGCAAGCGCATAAACGGAGCAACCCTTCCCGATGCACCTGCCACTTCTGGGCCCCCACCACTTCCAGGTCCCCGGACGCATCTTCTGGTGGACGGTGGGGCAAGGAAACCAAGGAGGCCAGGCCGCCCGGGACTACTTCAAGGTGTGTAATGGCATCCCACCGCCCTATGACGAAAAAGCGGGTGGTGGTTCCTGCTGCCTTCCAGGTCGTGAGTCTGAAGCCTACAAGGAAGTTTGCCTACCTGGGGCACCTGGCTCACAAGGTTGGCTGGAAGTACCAGACAGTGACAGCCGCCCTGCAGGAGAAGAGGAAGAAGGCCAAGATCCACTACTGGAATAAGAAACAGCTCATGAG
>XM_015124373.2
CACTTCTGCCGCCCCTGTTTCAAGGGATAAGAAACCCTGCGACAAGACCTCCTCCTTTCCCAGGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCCTGGTGCTCGATGGTCGAGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGCCGGAAGGTGGTGGTCGTACGCTGCGAAGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTCCAGAGGCCCCTACCACTTCCGGGCCCCCAGCCGCATCTTCTGGCGGACCGTGCGAGGCATGCTGCCTCACAAGACCAAGCGAGGCCAGGCTGCCCTGGACCGCCTCAAGGTGTTTGACGGCATCCCACCGCCCTACGACAAGAAAAAGCGGATGGTGGTTCCTGCTGCCCTCAAGGTCGTGCGTCTGAAGCCTACGAGAAAGTTTGCCTATCTGGGGCGCCTGGCTCACGAGGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCTTGGAGGAGAAGAGGAAGGAGAAAGCCAAGATCCACTACAGGAAGAAGAAGCAGCTCATGAGGTTACGGAAACAGGCCGAGAAGAACGTGGAGAAGAAAATTGACAAATACACACAGGTCCTCAAGACCCACGGACTCCTGGTCTGAGCCCAATAAAGACTGTTAATTCCTCATGCGTGGCCTGCCCTTCCTCCATCGTCGCCCTGGAATGTGCGGGACCCAGGGGCAGCAGTAGTCCAGGTGCCACAGGCGGCCGGGGACATAGGAAGCTGGGAGCAAGGAAAGGGTCTTAGTCACTGCCTCCCGAGGTTGCTTGAAAGCACTCAGAGAATTGTGCAGCTGTCATTTATCTATGACCAATAGGAAGAGCAACCAGTTACTGTTAGCAAAAGGGAACCAGAAGATGGGCTGCAGGGCCCTACCTTGTGAGTGGGGCATCTGTTGGACTTTCCACCTGGTCATATACTCTGCAGCTGTTAGAATGTGCAAGCACTTGGGAACAGCATGAGCTTGCTGTTGTATACAGGGTATTTCTAGAAGCAGAAATAGACTGGGAAGATGGGCAACCAAGGGGTTACAGGCATGGCCGTGCTCCTCACCTGTATTTTGTAATGAGAAATAAATTGCTTTTAA

Publications

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