Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GOT2P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_10) and its respective parental gene (in scaffold_m16_p_21). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_10:19053266-19054562  UCSC
Strand +
Parental Sequence GOT2_x1
Parental seq. overlap 1074 bp
Parental seq. overlap (%) 40.6%
Genomic Region Intragenic (NTN4)
Retrocopy Summary GOT2P1, located on scaffold_m16_p_10:19053266-19054562, is a retrocopy of the parental gene GOT2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GOT2
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_21:41491859-41512304
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa RACK1P1
Dolphin Tursiops truncatus RACK1P2
Horse Equus caballus GOT2P1
Dog Canis familiaris GOT2P1
Panda Ailuropoda melanoleuca GOT2P2
Cat Felis catus GOT2P3
Greater mouse-eared bat Myotis myotis GOT2P2
Kuhl's pipistrelle Pipistrellus kuhlii GOT2P3
Greater horseshoe bat Rhinolophus ferrumequinum GOT2P1
Egyptian rousette Rousettus aegyptiacus GOT2P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GOT2P1
TCAGATTGCTGCAAAAAAATCTGGACAAAGAATACTTGCCCATTGCTGAAATGGCTTAATTTTGCAACACAACTGCAGCATTAGCCCTGGACGAGAATAGCAAAGTGTTGAAAAGTGGCCAGTCTGTCACTATGTAGATCATTTCTGGAACTGGGCCTTAAGGATTGGAGCCAGATATCTGCAAATGGTTTTTAAGTTCAGCTGAGATGTCTTTCTGCCCAAACCGTCCTGAGGAAATTACACACCCACCTTCAGGGATGCTGGCATGCAGCTACATGATTATCTATACTGTGACCCCAAGGCTGTGGCTTTGATTTCACAGGTGCTAAGAAGGGCATTTAAAAAATGCCAGAGCAACGTGTTCCCCTGCACACCTGTGCCCCAATCTCGTGGGAGTGGACACCTCATCTTGAACAGTGGAAGGAAATAGCAACAGTAGTGAGGAAAAGAATCTGCGTTCTTTGACATGACCTGCCAAGGCTTTGCCAGTTGTGATGGTAACAAGGATGCTTGAGCTATGTGCCATTTTATCAAAGAGGGCATTAATGTTTTTATCTGCCAATCCCATGCCACGAAATTGGGCTTCTATGGTGAGTGTGTGGGAGCCTTCACTGCAGTCTGCAAAGATGTTGATGAAGCCAAAAGAGTGAAATTACACTTGAAGATCTTGATCTGTCCACTGTATTCCAGCCCTTCTCTCAATGGGACCCAGATTGCCTCAACCATTCTGACTAGCTTGGATTTTCTAAAACAGTGATTGCAGGAAGTAAAGTCATGGCCAACCTCATCATTAGCATGCAGACTCAGCTGGTCTCCAACCTCAAGAAGGAGGACTTCTCCCACAATTGGCAGCACGTTCCTGACCAGATTGGCATGTTTTGTTTCACAGGGCCAAAGCCTAAGCAGATGGAGTGGCTGACCAAGGAGTTTTCCATCTACATGACAGAGGTCAGCCACATCTCTGTGGCAGGGGTCACTTCAGACAACTGGGCTGCCTTGCTCAATAATGAGGACACCAAGTGATTTCCCTGGTGAGAGGGAACAGAGACAACCTTGTTGTCTTCAGCCTCTGCTATTGTGAGATTCCCAAGGAGGATGAGGGAGGGTGGATGGTGGTGAGAGGATCATTTCTTTTAACCACAGCGCTTCACTTAACTCAGGCATTGAATGTGTTTCTCAGAAAAGACATGTAGTGAAATAGGGCAGAGGCATCCGTGGTTGATGTCTGGAAACTTTTGGGCTCTAAACCAAACTCTTTCCCATTCTTTTATCTCTAGCTTTTCCAAAAGAGTTTACA
>GOT2_x1
GGCTGCGGCTAGGGGGACCGCGTGCCCCACGCGTGTGCCCTTGACAGGCTACCCTGGTGGGGTGCAGGGCTCACCTGTCGCAGCTTCCCTCTGGCAGGAGAGGGCTTGGCCGCTGGCGTCTGGCTGCAGTTTGTGTGCAGGGGAGAAGGAAGCGCATGGGAGGAAGGTTCCCGGGACCCTGGCATTCAGACCTGGCTATCCTCTCTGCATCCTGTGACCTTGGCGCACGGCATCCTCTGGCCGGTGCTACTGCCTGAGTCACCCGTGACACACACACACCCCTCCGCCGTTTGGCCTTTGGATGGAGAAGGGTCCGCGTCTCCTGGTGGGCCCATGTGGAGATGGGGCCCCCAGATCCCATCCTGGGAGTCACAGAAGCCTTTAAAAGAGACACCAACAGCAAAAAGATGAATCTGGGAGTTGGTGCCTACCGGGACGACAATGGAAAGCCTTACGTGCTCCCGAGTATCCGGAAGGCAGAGGCCCAGATCGCTGCAAAAAATCTGGACAAAGAATACCTGCCCATTGGGGGACTGGCTGAGTTTTGTAAGGCATCTGCAGAACTCGCCCTGGGCGAGAACAGCGAAGTACTGAAAAGTGGCCGGTATGTCACCGTGCAAACCATTTCTGGAACTGGGGCCTTACGGATCGGAGCCAGTTTCCTGCAAAGATTTTTTAAGTTCAGCCGAGATGTCTTTCTGCCCAAACCAACCTGGGGAAATCACACGCCCATCTTCAGGGACGCTGGCATGCAGCTGCAGGGTTATCGATACTATGACCCCAAGACCTGTGGCTTTGACTTCACAGGCGCTATGGAGGACATTTCAaaaatgccacagcagagtgttCTTCTCCTGCATGCCTGCGCCCACAATCCCACAGGAGTGGACCCGCGCCCTGAGCAGTGGAAGGAGATAGCCGCCGTGGTGAAGAAAAACAATCTCTTTGCGTTCTTTGATATGGCCTACCAGGGCTTTGCCAGTGGTGATGGTAACAAGGATGCCTGGGCTGTGCGCCACTTCATTGAACAGGGCATCGATGTTTGCCTCTGCCAGTCCTATGCCAAGAACATGGGCTTATACGGTGAGCGTGTGGGAGCCTTCACTGTGGTCTGCAAAGATGCGGATGAAGCCAAAAAGGTGGAGTCACAGTTGAAGATCTTGATTCGTCCCATGTATTCCAACCCCCCTGTCAACGGGGCCCGGATTGCCTCCACCGTTCTGAACAGCCCCGACCTTCGAAAACAGTGGTTGCAAGAAGTGAAAGGCATGGCTGACCGCATCATTAGCATGCGGACCCAGCTGGTCTCCAACCTCAAGAAGGAGGGGTCCTCCCACAACTGGCAGCACATCACCGACCAGATTGGCATGTTTTGTTTCACAGGACTAAAGCCCGAACAGGTGGAGCGGCTGACCAAGGAGTTCTCCGTCTATATGACAAAAGATGGCCGCATCTCCGTGGCAGGGGTCACCTCTGGCAACGTAGGCTACCTTGCCCATGCCATTCACCAGGTCACCAAGTAATTTCCCTGATGGGAGGAAACAGAGACAACCTTCCTATCAACCTCTGCTGTTGTGAGATTCACATGGAGGAAGAGGGAGGGTGGATGGTGGTGAGCAGATCATTTCTTTCAACCGCAGTACTTAAAACTCAGCATTTGAATGTGTTTCTCAGAAAAGAGCATGTAGGGAAATAGGCAGAGGCATCTGTGGCTGGTGCGTGGAACTTTGTGGCTCTAAACCAAACTCTCCCTCATCTTTGTATCTCCAGCTTTTCCAAAAGAGTTTACATGGTACGAGAAAGTCATAGCCAAAAAAATCTGTCAATCACACCATTGCAATATTTCAGAAGCTTTAACTGTGGCACCTTGCAGAGTTGAATCAGCAAGAAAATGCCATTTAGTAGCGGCTTTATGAGAAGACCACCTAGTTCTGACAGTAATAGTCAGCCTCACGTTTGTCCTTCCAGGACGGAACAGCCATAGCAACAGACCACATCACAGAAATTGTATTTTGTGAAAACCAGCAAGTCGGCTGCCACTGCAGTGAGGAAAATTAAAAGATGCTGTTTCCAGTCTTAAAGGGGAAAAAAAAAAAAGGCGGCTCTCCTTGTACTTACTTACGTGCATTTTTAATGTTCCCCTCTCTTCTTTTATCACTGCTGTTCTTTTTCTTAGGCACTAAGATCTATAACCAGCTTAGATTTTCATCCTATTCTGCTTGATTGACCATCAATCCCATCCTATAGCATTCACTTGTTAGAAGAATGAAGAACATAATTTACTGCTCACCCCATACCCTTTTCCAGCAAATAGTGGAGAATGGTTAACGAGATACGTCAGCATCCTCTTCAGTGATTGCCTGCCTTCTACCAGGACAGTGCCTGTGCCCAGTTGGACCTGGTACCTTCGTTCAGTGCTGCTGTGCAGTCGCTTGTCTCACATCGTGAGTCAGGTGCTGCAGGGTTAAACCAGGCAAGAGGATATTCAGGGCTTTGGTTCTAACCTCCGTGTGCTTCCAGCTGGGCTCAGACTTAGTTCACCTTTGGAAAGATAACCACCATCTACTCTAATTGTGTAGACTTACTGCAGCCTGGTTTCTCTGTTACAATAAAGTTACTGTAGACCC

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