Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC03351P7
Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_23) and its respective parental gene (in scaffold_m16_p_4). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_23:8132669-8134135  UCSC
Strand +
Parental Sequence LOC03351_x1
Parental seq. overlap 892 bp
Parental seq. overlap (%) 41%
Genomic Region Intragenic (ACTA1)
Retrocopy Summary LOC03351P7, located on scaffold_m16_p_23:8132669-8134135, is a retrocopy of the parental gene LOC03351. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC03351
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_4:2878896-2882205
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ACTG1P26
Chimpanzee Pan troglodytes ACTG1P3
Bonobo Pan paniscus ACTG1P3
Gorilla Gorilla gorilla ACTG1P1
Orangutan Pongo abelii ACTG1P4
Gibbon Nomascus leucogenys ACTG1P4
Green monkey Chlorocebus sabaeus ACTG1P20
Crab-eating macaque Macaca fascicularis ACTG1P5
Rhesus Macaca mulatta ACTG1P4
Baboon Papio anubis ACTG1P3
Golden snub-nosed monkey Rhinopithecus roxellana ACTG1P10
Marmoset Callithrix jacchus ACTG1P32
Mouse lemur Microcebus murinus ACTBP2
Mouse Mus musculus Actg1P8
Rat Rattus norvegicus Actg1P17
Chinese hamster Cricetulus griseus Actg1_1P2
Pig Sus scrofa ACTG1P4
Cow Bos taurus ACTBP2
Sheep Ovis aries ACTG1P2
Dolphin Tursiops truncatus ACTBP2
Dog Canis familiaris ACTG1P3
Panda Ailuropoda melanoleuca LOC100481739P1
Cat Felis catus ACTG1P4
Pale spear-nosed bat Phyllostomus discolor LOC01363P7
Greater mouse-eared bat Myotis myotis LOC01585P11
Greater horseshoe bat Rhinolophus ferrumequinum LOC01822P14
Egyptian rousette Rousettus aegyptiacus LOC05213P4
Sloth Choloepus didactylus ACTBP2
Rabbit Oryctolagus cuniculus Without Homology
Horse Equus caballus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC03351P7
CGCAGGGCGTCATGGTGGGTATGGGGCAGAAAGATTCCTACGTGGGCGACGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAATACCCCATTGAGCACGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGCGTGGCCCCCGAGGAGCATCCTACCCTGCTCACCGAGGCCCCCCTCAACCCCAAGGCCAACCGCGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACGTGCCCGCCATGTACGTGGCCATCCAGGCTGTGCTGTCCCTCTATGCCTCCGGCCGTACCACCGGTGAGTGCCCGCGAAGCCACACAGCCCGCCCGAGGCTGAGCCCCTTCCTGTCCCCCAATGCGCGCCGGCTCGCAGCCCGAGCGCCCCGGCCGGCCTCGCTCCTCCCCAGGGGCCGTCCTGCTGCGCCCGCCCGCGCGGGGTGGAGAGGCCGCTCACTCCCCGCCCGGCTCCCGTGCAGGCATCGTGCTGGACTCTGGCGATGGCGTCACCCACAACGTGCCCATCTATGAGGGCTACGCCCTGCCTCACGCCATCATGCGTCTGGACCTGGCTGGCCGTGACCTCACCGACTACCTGATGAAGATTCTCACCGAGCGTGGCTACTCCTTCGTGACCACAGGTGCGCGGCGACCGGGCCCCCTGGGCGGGCGGGGCGGCGCTCCGGCCCCGGAACCTCGAGTCGAAGGCTCCCCTCTGGCCCCTGCCCCCCGCAGCTGAGCGCGAGATCGTGCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTCGAGAACGAGATGGCGACGGCCGCCTCCTCCTCCTCCCTGGAAAAGAGCTACGAACTGCCTGACGGGCAGGTCATCACCATCGGCAACGAGCGCTTCCGCTGCCCGGAGACGCTCTTCCAGCCCTCCTTCATCGGTGAcGCAGCGCCGCAGCCCACACCCCCGCACCTGCTGACGCTCCCCCGCCCGTGGTCCCCAGGTATGGAGTCGGCGGGCATCCATGAGACCACCTACAACAGCATCATGAAGTGTGACATCGACATCAGGAAGGACCTGTACGCAAACAACGTCATGTCTGGGGGCACCACTATGTACCCGGGTATCGCTGACCGCATGCAGAAGGAGATCACGGCGCTGGCTCCCAGCACCATGAAGATCAAGGTGGGTGGCCGCCCCCACCTGACGCGGTGTCTTTGCAGATCATCGCCCCTCCCGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCACCAAGCAGGAGTACGACGAGGCCGGCCCCTCCATCGTCCACCGCAAATGCTTCTAG
>LOC03351_x1
ACTGCTGCGACCGCGTCCACCCGCTCACACAGGCCCCTCGGCTCCGCTGCTCCTCCGCCTTCGCCGGTCTCCACCGCCTCCAGCTCGACATGGATGACGATATTGCTGCGCTCGTGGTCGACAACGGCTCCGGCATGTGCAAAGCCGGCTTCGCAGGGGACGATGCCCCCAGGGCTGCAGGGCGTGATGGTGGGCATGGGCCAGAAGGACTCCTACGTGGGCGATGAGGCCCAGAGCAAGAGAGGCATCCTCACCCTGAAGTACCCTATTGAGCACGGCATCGTCACCAACTGGGACGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTGCGTGTGGCCCCCGAGGAGCACCCTGTCCTGCTCACCGAGGCCCCCCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCCGCCATGTATGTGGCCATCCAGGCTGTGCTGTCCTTGTACGCCTCTGGCCGTACCACTGGCATTGTGATGGACTCCGGTGACGGGGTCACCCACACTGTGCCCATCTATGAGGGGTATGCCCTCCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACAGACTACCTCATGAAGATCCTCACGGAGCGTGGCTACAGCTTCACCACCACAGCCGAACGGGAAATTGTGCGTGACATCAAGGAGAAGCTGTGCTATGTCGCCCTGGACTTCGAGCAGGAGATGGCCACTGCAGCCTCCAGCTCCTCCCTGGAGAAGAGCTACGAGCTGCCCGACGGTCAGGTCATCACCATCGGCAATGAGCGGTTCCGCTGCCCCGAGGCCCTCTTCCAGCCTTCCTTCCTGGGCATGGAATCCTGTGGCATCCACGAAACTACCTTTAACTCCATCATGAAGTGTGACGTCGACATCCGAAAGGACCTCTACGCCAACACGGTGCTCTCTGGTGGGACCACCATGTACCCAGGCATCGCTGACAGGATGCAGAAGGAGATCACCGCCCTGGCTCCCAGCACGATGAAGATCAAGATCATTGCTCCCCCTGAGCGCAAGTACTCCGTATGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGACGAGTCCGGCCCCTCCATCGTCCACCGCAAATGCTTCTAGGCTTCTAGGCGGACTGTTACTTAGTTGGTTACACCCTTTCTTGACAAAAACCTAACTTGCGCAGAAAACGAGATGAGATTGGCATGGCtttatttgtttttttttttgtttgttttcttggttttttttttttttttttttttttttGGCGCTTGACTCAGGATTTAAAAACTGGAACGGTGAAGGTGACAGTCTGTTGGAGCGAGCATCCCCAAAGTTCTACAATGTGGCCGAGGACTTTGATTGTACATTGTTCTTTTTTTTTAACAGTCATTCCAAATATCGTGAGATGCATTGTTACAGGAAGTCCCTTGCCTGCCCCAAAGCCTCCCACTTCTCCCTAAAAAGGGCCAGTCCTTGCCCCGAGTCCACACGGGGAGGGTGATAGCATTGCTTTTGTGTAAATTATGTAATCCAAATTTTTTAATCTTCGCCTTAATACTTGTTCTTTTTGTTGTTTTTGAATGGTCAGCCGTCATGGCCCCCCTTTTTGTCCCCAACTTGAGATGTATGAAGGCTTTTGGTCCCCCTTGGGAGTGGGTTGAGGTGTGGAGGCAGCCAAGCCAGGGCTTACCTGTACACTGACTTGAGACCAGTTCAATAAAGTGCACACCTT

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