Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LRRC34P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_10) and its respective parental gene (in scaffold_m16_p_5). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_10:32820751-32821500  UCSC
Strand -
Parental Sequence LRRC34_x1
Parental seq. overlap 633 bp
Parental seq. overlap (%) 32.6%
Genomic Region Intragenic (C2CD5)
Retrocopy Summary LRRC34P1, located on scaffold_m16_p_10:32820751-32821500, is a retrocopy of the parental gene LRRC34. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LRRC34
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_5:36574763-36599662
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa LRRC34P1
Cow Bos taurus LRRC34P1
Sheep Ovis aries LRRC34P1
Dolphin Tursiops truncatus LRRC34P1
Horse Equus caballus LRRC34P1
Dog Canis familiaris LRRC34P2
Panda Ailuropoda melanoleuca LRRC34P2
Cat Felis catus LRRC34P1
Pale spear-nosed bat Phyllostomus discolor LRRC34P1
Greater mouse-eared bat Myotis myotis LRRC34P2
Kuhl's pipistrelle Pipistrellus kuhlii LRRC34P1
Egyptian rousette Rousettus aegyptiacus LRRC34P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LRRC34P1
GATATTGGGCCCAAAGGTGGAGAATTGATTGTTAAAGCACTATATAAGAATAACATTCTGAGATACCTAAGAATGACTGGAAACAAGATTGAAAACAAAGGTGGAATATTTTTTTGCTGCGATGCTACAAATTAATTTATCCTTAGAGAAATTAGATCTGGGTGCCTTTCATTTGAGAATATAAAGTATGATAACATTTGCTACAGCCCTAACTCAACACCAAATAACTAAGGGAATAAACCTAAACCAACCTATACTGTATGACAAACAGAAAGACTCTACAGCTTGTCTAGGCCACATGTTGAAAGAAAATTCCTGCCTTATTGAACTACATATGTGTAAACATATAAAAATTGTGATATAAAACAGGTAATGTACTGTATCTGAAGAGTAGCCTATGTTACCTTGATGTCCACTGGTTGTCATTAGTCAGCAACAACACAGAGGCAGAAGGACCTGCTGCACTTTCTCAGTCAGTGGAAATAAATACCATACTCTCTAATATCTGTATTTGGGGAAACAAATTTGATGAGGCTACATGTGTGGCATATTCAGACTTCATTCAGATGGGACATCTAAAACTAAATACAGATGTGGAGCCCTTTGTGGTAGATGTATGTGTGTATCTTGCAGAAGTCTCCAGTGGCCTTAAAAACCATAATTATTGGACACCAACTTATGGAGAAGCTTGTGGACACTCATCTCACACAGGTTTTACTCTTGTGCCAGTAGGTCAACATCTATGAAAAA
>LRRC34_x1
ggctcagtggttgagcatcgacccatgcaccaagaggttgccggttcgattcccagtcagggcacaggcccaggttgtgggcctgatccccagtggggggcatgcaggaggcagccaatcgatgttctttctcatcgatgtttctatctctttctccttctcccttcctctctttctaaaatcaataaagaaaaaaaaaattAATCAGTGGGCAACACAGGGTTTCAAGAAAACTTGCCTTGCCCAGCACAGTAATTTCTTGACAGTGGAGCACTGATCTGGACTTGCCTAGTGGGATAGCATGAGGGAGAGAGGATTCAGACATTTTGTTTTTCACCCTTGAACTGTGTTCATAAACAGCCTGGTTTCACTTGGAGGGTCTCTGTCTGGCTCCAGAGTCTTCTACAAGGCCCTGGACTTCCTTCTCTTGGGTCCTTAGCGGCCCCAAACAGAAGGCCTCCACTTCCTTCCTTCCTCTTCTTCCCATATCCAGTTCTAAATCCTGATCATGTTACCCTGAGTTTTTGTTCCTTTCTCTTCATTCCCCCAAGTCCAGTTTTAGCTTAGGCCGTATTATCTCTCCTGGGCTACTGCAGCTGCTTCAGACCTCCCCTCCCCTATGTCAAATTCGTTCTCCATCAGCTGTTTCACATCTGAGGGCTCCCAGCACCATGCTCCATAACAGCTGCGCTTCTCAGAAGATGCACAGGACTCCACGTGGATCTGGTTCTGCCTGTCCCCTCACTCTGGACTCATTTGGGCAACCCCAAGTACCTGCACGTCTCCAGCACGCATCAAGCAGTTCTGCCTTCCAGCAGGTTCACTACACCGGTCAGGGTATTACCTTCTCCAAGAAGCCCTAATGATGCTCCCCAACTCTCAAAGACGGATCTACAATGACCCTTTATGCTCCCTTAGCCCCGCGCCCTATCCCTGCTGGTGCTACCATCTCCTTCTGCACTTGGCCTCCGCAGGTTTGGATGTTAGATACAACCTCATTAGTGACGTTGGTGCATACCATGCTGCAAAACTGCTTCAGAAACAATACAATCTCATTTACATAAACCTTATGTTTAATGATATTGGGCCCAAAGGTGGAGAACTGATTGCTAAAGCGCTACATAAGGATACAACTCTGAAATACCTAAGAATGACTGGAAACAAGATTGAAAATAAAGGTGGAATGTTTTTTGCTGCAATGCTACAAATTAATTCAACCTTAGAGAAGTTAGATCTGGGTGATTGTGATCTGGGAATGCAAAGTGTGATAGCATTTGCTACAGTCCTAACTCAAAACCAAACAATTAAAGGAATAACCCTAAACCGACCTATACTGTACGGAGAACAGGACGAGTCCACAGTTCATCTAGGCCACATGTTAAAGGAAAATCACTGGCTTGCTGAACTACACATGAGTAAGCATGATGTGAAAAACTGTGGTCTAAAACACTTATGTGATGCACTGTATCTGAACAGAAGCCTGCGCTACCTTGATGTCAGCTGGTTGTCAGTAGTCAGCTGCAGCATAGAGGGAGAAGGACTTGTTGCACTTTCACAATCAATGAAAACAAATCCCATACTCTCTAACATCTATATTTGGGGAAACAAATTTGATGAGGCTACATGTATGGCATATGCAGGCTTAATTCAAATGGGCCGTCTAAAACCAGACAATACAGACGTGGAACCATTTGTGGTGGATGGACATGTGTATCTTGCTGAAGTCTCCAATGGCCTTAAAAAGCACTATTACTGGACACCAACTTATGGAAATGCTCTCTGTCACTCATCTAATGCCGGTTTTAGTCTTGTACCAGTAGGTCAACAGCTATGAAAACAGCTCTAAAGTAATTTTCACACATTTTTTTTATTACGTTCACAGAGATTAATATTTTATTGCCTATTTCTTTCATAAATTATAATAAATTACTCTTGTCC

Publications

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