Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL23P11
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chrX:24513065-24513217  UCSC
Strand +
Parental Sequence NM_001266209.1
Parental seq. overlap 130 bp
Parental seq. overlap (%) 25.6%
Genomic Region Intergenic
Retrocopy Summary RPL23P11, located on chrX:24513065-24513217, is a retrocopy of the parental gene RPL23. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL23
Full Name ribosomal protein L23
Also known as -
Coordinate chr16:49924936-49928548
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL23P16
Chimpanzee Pan troglodytes RPL23P10
Bonobo Pan paniscus RPL23P10
Gorilla Gorilla gorilla RPL23P10
Orangutan Pongo abelii RPL23P10
Gibbon Nomascus leucogenys RPL23P10
Green monkey Chlorocebus sabaeus RPL23P12
Crab-eating macaque Macaca fascicularis RPL23P11
Baboon Papio anubis RPL23P11
Golden snub-nosed monkey Rhinopithecus roxellana RPL23P4
Mouse lemur Microcebus murinus RPL23P11
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL23P11
CACACAGGAGCTGAAAAATCTGTGTATTATCTCTGTGAAGGGAATCAAGGAATGGCTGAACAGACTGTCTGCTGCTGGTGTGGGTGATGCGGTGATGGCTACAGTTAAGAAAGGCAAACCACAGCTTAAAAAGAAGGTACACCCAGCAGTGGT
>NM_001266209.1
CTTCCTTTTTTCTTTTTTCCGGCGTTCAAGATGTCGAAGCGAGGACGTGGTGGGTCCTCTGGTGCGAAATTCCGGATTTCGTTGGGTCTTCCGGTAGGAGCTGTGATCAATTGTGCTGACAACACAGGAGCCAAAAACCTGTATATCATCTCCGTGAAGGGGATCAAGGGACGGCTGAACAGACTTCCCGCTGCTGGTGTGGGTGACATGGTGATGGCCACAGTCAAGAAAGGCAAACCAGAGCTCAGAAAAAAGGTACATCCAGCAGTGGTCATTCGACAACGAAAGTCATACCGTAGAAAAGATGGCGTGTTTCTTTATTTTGAAGATAATGCAGGGGTCATAGTGAACAATAAAGGCGAGATGAAAGGTTCCGCCATTACAGGACCAGTAGCAAAGGAGTGTGCAGACTTGTGGCCCCGGATTGCATCCAATGCTGGCAGCATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAATTTTAAACCCATTAAAAAGTGTTTG

Publications

PMID - Link Title