Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL21P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_1) and its respective parental gene (in scaffold_m16_p_10). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_1:125832619-125833039  UCSC
Strand -
Parental Sequence RPL21_x2
Parental seq. overlap 367 bp
Parental seq. overlap (%) 76%
Genomic Region Intergenic
Retrocopy Summary RPL21P1, located on scaffold_m16_p_1:125832619-125833039, is a retrocopy of the parental gene RPL21. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL21
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_10:101772972-101777454
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL21P183
Chimpanzee Pan troglodytes RPL21P65
Bonobo Pan paniscus RPL21P68
Gibbon Nomascus leucogenys RPL21P54
Marmoset Callithrix jacchus RPL21P18
Dolphin Tursiops truncatus RPL21P28
Egyptian rousette Rousettus aegyptiacus RPL21P95
Sloth Choloepus didactylus RPL21P63
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL21P1
ATGACTAACGCAAAGGGAAAGAGGAGAGGCACCTGCTATATGTTCTCTAGGCCTTTTAGAAAACATGGAGTTGTTCCTTTGGCTACATACATGTGCATCTATAAGAAAGGTGATATTGTGGACATAAAGGGAATGGGCACGGTTCAAAAAGGAATGCCCCACAAATGTTACCATGGCAAAACTGGAAGAGTCTACAGTGTCACCCACCATGCAGTGAGCATTGTTGTGAACAAACAAGTCATGGGCGACATTCTTGCCAAGAGAATTAATGTACGTATTGAGCATATCAAGCACTCTAAGAGCTGAGATAGCTTCCTGAAACGTATGAAGGAAAATGATCAGAAAAAGAAGGAAGCCAAAGAGAAAGGTACCTGGGTTCAACTGAAGC
>RPL21_x2
ATGACGAACACAAAGGGAAAGAGGAGAGGCACCCGCTATATGTTCTCTAGGCCTTTTAGAAAACATGGAGTTGTTCCTTTGGCTACGTACATGCGAATCTATAAGAAAGGTGATATTGTGGACATAAAGGGAATGGGCACTGTTCAAAAAGGAATGCCCCACAAATGTTACCATGGCAAAACTGGAAGAGTCTACAATGTCACCCAGCATGCAGTGGGCATTGTTGTGAACAAACAAGTCAAGGGCAAGATTCTTGCCAAGAGAATTAATGTGCGTATTGAGCATATTAAGCATTCTAAGAGCCGAGATAGCTTCCTGAAACGTGTGAAGGAAAATGATCAGAAAAAGAAGGAAGCCAAAGAGAAGGGGACCTGGGTTCAGCTGAAGCGTCAGCCTGCTCCACCCAGAGAAGCACATTTTGTGAGAACCAATGGAAAGGAGCCAGAGCTGCTGGAACCCATCCCCTATGAATTCATGGCATGA

Publications

PMID - Link Title