Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS4XP13
Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_14) and its respective parental gene (in scaffold_m16_p_2). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_14:45159234-45159872  UCSC
Strand -
Parental Sequence RPS4X_x1
Parental seq. overlap 522 bp
Parental seq. overlap (%) 39.5%
Genomic Region Intragenic (PRUNE2)
Retrocopy Summary RPS4XP13, located on scaffold_m16_p_14:45159234-45159872, is a retrocopy of the parental gene RPS4X. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS4X
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_2:1388261-1392554
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Cow Bos taurus RPS4XP7
Sheep Ovis aries RPS4XP4
Dolphin Tursiops truncatus RPS4XP9
Horse Equus caballus RPS4XP6
Panda Ailuropoda melanoleuca RPS4XP17
Cat Felis catus RPS4XP15
Pale spear-nosed bat Phyllostomus discolor RPS4XP5
Greater mouse-eared bat Myotis myotis RPS4XP10
Kuhl's pipistrelle Pipistrellus kuhlii RPS4XP7
Greater horseshoe bat Rhinolophus ferrumequinum RPS4XP19
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Dog Canis familiaris Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS4XP13
ATTAAGATTGATGGCAAGGTCTGAACGGATGTAGCCTGCCCTGGAGATTTCATGGACATCATCAGCATTGACAAGGCCATAGAGAATTTCCCTCTGATCTATGACGTCAAGGGTGGCTTTGCTGTTTATCGGATTACACCTGAGGAGGCCAAGTACAAGTTGTGCAAAGTAAGAAAGGTCTTTGTAGACACAAAATAAATTCCTCCTCTGGTGACTCATGATGCTCACACGGTCCGCTCCCGTGATCCCTTCACCAAAGTGAACGGCATCATTCAGATTGATTTAAAAACTGGCAAGATTACTGATTTCAACAAGTTTGATACTGTTAAACTGTGAATGATAATAGGAGGTGCTAAGTTGGGAAGAATTGGTGTGATGACCAACAGAAAGAGACATCTTGGTCTTTTTGATGTGCTTCAGATAAAAGATGCCAACAACAACAGCTTTGCCACCCAGCTTGCCAATATTTTTGTTACTAAAAGGGCAATAAACCATGGATTTCTCTTCTCTGAAGAAAAGGTATAGCCTCATCATTGCCAAGGAGAGATACAACAGACTGGCAGCCAAACAGAGCAGTAAGTGAAATGATCTCTAGGTAATAGAGTTGGAAGGTCTTTGTACTTAACTAATGATAATACG
>RPS4X_x1
CTCTTTCTGTGCCTAGCGCAGCCATGGCCCGTGGTCCCAAGAAGCATCTGAAGCGTGTAGCAGCTCCAAAGCATTGGATGCTGGATAAACTGACTGGTGTGTTTGTGAGTATCGTTACATTGTCATGCATTTCAAGGGGCATGGTTACTTTTCCCCCAGTTTTATTGACATGTACTTGATAGAATTTAAGGGACATATTTTCTACCGTTCCTTTGTGTGTCAGACATCCCTGATTACTGGATCCATGAATGTTTCTTGCAGTGCCTCCCATAAGGTTTCTGTGCCTCATTTATTCCACATTCCACATAGCACACTTACATGGACTCAGGACCCACATGTTCTTAGGCCTGGTCCTCTGAAGGGGGCAAAATGCTGTAAAACTTGAAGGTATGGAAGAGTTCTCTAAGCTTTAAATACCTCTTGTTGACCCAAATTGGGGGGAGGGTTATGGATAGTCTGCTGTCTAGTTCTTGGATCTCAGGACATGGAAGGTGGGTTTGTGTGAATCTCAACAATGGTTTGAGGGTTGTTTTTCATCATTTTACAGGCTCCTCGGCCATCCACCGGTCCCCACAAGCTGAGAGAATGTCTCCCTCTCATCATTTTCCTAAGGAACAGACTGAAGTATGCCCTCACAGGAGATGAAGTCAAGAAGATCTGCATGCAGAGGTTTATTAAGATCGATGGCAAGGTCCGAACTGATATAACCTACCCTGCTGGGTTTATGGATGTCATCAGCATTGACAAGACTGGAGAGAATTTCCGTCTGATCTATGACACCAAGGGTCGCTTTGCTGTCCATCGTATTACACCTGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGGAAGATCTTTGTGGGCACAAAAGGAATCCCTCATCTGGTGACCCACGATGCTCGCACCATCCGTTACCCCGATCCCCTCATCAAGGTGAACGACACCATTCAGATTGATTTGGAGACTGGCAAAATCACCGATTTCATCAAGTTTGACACTGGTAACCTGTGTATGGTGACCGGAGGTGCTAACCTGGGAAGAATTGGCGTGATCACCAACAGGGAGAGACATCCTGGTTCTTTCGACGTTGTTCATGTGAAAGATGCCAACGGCAACAGCTTTGCCACCCGGCTTTCCAACATTTTTGTTATTGGCAAAGGCAACAAACCATGGATCTCCCTTCCCCGTGGCAAGGGTATCCGCCTCACCATTGCTGAGGAGCGGGACAAGAGACTGGCGGCCAAACAGAGCAGTGGCTGAAATCAGCCCTAGGTGACACGATTGGAAAAGTCTTTGTACTTAATTAAAGATAATACAGCACG

Publications

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