Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CBX3P5
Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_13) and its respective parental gene (in scaffold_m13_p_13). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_13:17375493-17375876  UCSC
Strand +
Parental Sequence CBX3_x1
Parental seq. overlap 327 bp
Parental seq. overlap (%) 9.3%
Genomic Region Intergenic
Retrocopy Summary CBX3P5, located on scaffold_m13_p_13:17375493-17375876, is a retrocopy of the parental gene CBX3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CBX3
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_13:34400461-34411210
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa CBX3P6
Dolphin Tursiops truncatus CBX3P2
Horse Equus caballus CBX3P1
Dog Canis familiaris CBX3P12
Panda Ailuropoda melanoleuca CBX3P1
Cat Felis catus CBX3P1
Pale spear-nosed bat Phyllostomus discolor CBX3P6
Greater mouse-eared bat Myotis myotis CBX3P4
Kuhl's pipistrelle Pipistrellus kuhlii CBX3P3
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CBX3P5
ATTGGAAACATGAAGAAAATTTAGATTGTCCAGAGTTTATTGAAACATTCTTAGTTCTCAAAGGGCTGGTAAAGGAAAAGACAGTACAGAAAGAAAATCTATCTGACAGCGAATCTAACGATAGCGAATTAAAGAAGAAAAGAGATGCTGCTGACAAACCGAAAAGCTTTGCCACGGATCTCGATCCTGAACAAGATGCCACAGACAGCGGTGGAGAACTAATGTTTCTCATGAAATGGAAAGATAGATTAAAATGAGGTAGACTTGGTGCTGGCAAAAGAAGCACATATAAAGTGTTCTCAAATTGTAATTGCTCTTTGGTGAAGAGAGACTAATTTGGAATTCTTGTCCAGAAAATAAAGTTCAATAATGGTTTACATTGCT
>CBX3_x1
AGTATATAATTGAATTGGCTTTACAGTCACCTGTGTCCAAATAGTGGCTGAGAAAAGAACTATCTGTGCCTAATGCTTTGAGGATAAATACACTAAAAGCAAATAGATTCTTCTATTGAAATTAATTGCTTTTGTACACAAGTATTTTAATCTAACTTTTTATTTTAAAATGATTTAATTAGTGTCATATGTGTGCCATGACTTAAATGCAAAAGTAAGTGAATTTTCCTTTGAATAAAATAGCACTTGAAGTTAGCTTATGAATGCTGTTATAGTAAATACTTCATTTTTTATACTTTTTTATTAGTGTTTATCCTTTTAATTTTGTGTTTATTTTTGTCATCCTTTTTATTCTGTTAACCTCTTACCTTCATGGACATAGCACTTTTGTTTATTATTTAGGATCAGTATCTAATAAGCTTTTGTCCACTCCAGTATTTCTCACTCTTCCCACTGCTATTCTTACCTTCCTTATACTATACAGAAGCAGAAAGCTGGCTGACAGGTTGCAGTAGCCAAGTATTTTAACTGGTGAAAATTGTAAAGCCTGACCTGGCGATGGTGTCCACCAAAGTCAGATATTTGCTGCATTTTTTAAAAATTCCAGAGGATTTTTATTTCTTGTATATGTATGTACATACCTTTAATGATTACATAGTTTTACTGTCCTTTTGCAATCTTATGGCATTACTGTTACCTTTTTCTGCTTGTATGCTCTTTTTAGGGATGACTTTGGTGACCATGCAATTAAGATTTTTTTTTTCATAGTATCTGGTTTAAGATGAAATGATAAATAAGCATAACATTTGGGATTCCCGCCCTTAGTCTCTTCTAATTGACCAGTTTGATTTTTACTTAACCTCGAGTTTTAGCCCTCTTGTAACAAATCTGAGTTATTAGAAAATAGCTGGTTGAGCTTGGTCTCCTGCTTTTCTCAAATATACTTTTTTACAATTAAAAAAACTAAGTTAAAACTTGTTCAAAGTGAATTTTGTCGTCTACCAGTTTAGACTCTTAAGAAACCAAAAGGATAGAATTTTTTTACAGAATTCAGATGATCCGGCATTTTGGCCTCTTGAAATGACAGCATTATAGAGTTGTTCCCAAGTGGTCGGTAATATTAACCAATGGAGATTATAGGAAAATAGTCTTTTTTTTTTTTTTTACCCTATTCATGGTTTCCTTCATTGATCCTGCTATTGATAACAGGATTCTGAACTCTTTTCGTTTTTATTCTTAACAGTTACCTTTTTTCTGTATTGAGATTTCTAACATTGGTGTTCGAATCAGCAAAGCAGGTATTATGTTTAGGGGCTATAGTATTAactatactatactatactatactatactatactatactatactaatactatactatactatactataGAGTCTTTGGTTCAATTAGTAAGACCTGTCACTGCTACTTACTCTCTTCTGTATCATTCTCTTAATACCTTCTAGTTGTGGCTGTGTTGTCATTAAAATGAATTTAAAAATCTAAAAAAATTGGTGGTATAGACAGCATACAAATAAGACAACAGTATTTTTTACATAATGTTTTTTGATCATATTTCAGTGATGGGTGGTGGGTTTAAGCTAAACCAACAGAATTAAGCTTTCCTTTATTTTATTGTTGACTTTTATTTTTTCAGGAGGTGTCTACTCTGGGATAAAAAAAAGTAAAAATTTAGATGTCTAATGCAGCAATAACATAAGCAATTTAGTATTTTAAGTGTACTCAAAAGTAAAATAGAAAAGATGTTTAATTCCGTTTTTGTTTTTAGCAAAAAATGGGAAAGAAACAAAATGGAAAAAGTAAAAAAGTTGAAGAGGCAGAGCCTGAAGAATTTGTGGTGGAAAAAGTACTAGACCGACGCGTCGTGAATGGGAAGGTGGAATATTTCCTGAAGTGGAAGGGGTTCACAGATGCCGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAGTTAATTGAAGCATTTCTAAATTCTCAAAAAGCCGGTAAAGAAAAAGATGGTACAAAAAGAAAATCTTTATCCGACAGTGAGTCTGATGATAGCAAATCAAAGAAGAAAAGAGATGCTGCTGACAAACCGAGAGGCTTTGCCAGAGGTCTTGATCCTGAACGAATAATTGGTGCCACAGACAGCAGTGGAGAATTAATGTTCCTCATGAAGTGGAAAGATTCAGATGAGGCAGATTTGGTGCTGGCAAAAGAGGCAAATATGAAGTGTCCTCAAATTGTAATTGCTTTTTATGAAgagagactaacttggcattcttgtcctgaagatgaagcccaataattgtttgcattgctttttatatatatttatatatatatataaaatcCGGGTCTTGGTTTTTTGATTTATTAGTGTGAAGAAATAACTGCATTCTAATGAAAATCACGTTTGACATGTTTGTTTTGAAGTAGTATTGGGGGAGTTGTTGGGGAGTGGTTTTGCATCTATAACACTGGTTACTTTGAACAAAAGCTTTCTGTAGTTGCTTTCTTTATCAGAAAAGAATATTTGATACCATGGTATACTTTTTCCTCTGCATTAGATAAGTCTTTCTAAATGTCAGGGGAAATTTCCGTTGCCATCACTCAGTCAGAATTTGAGTTTAACTCATGTATGCCTACAGGGGATCATCGTGGGTTTTATTTTATTTGGGGATTTTTTGGTGTGTATACAAACAAAACATATGTAAATGGttttctttcttctttttttttttttttttttttAAACATTTACCAAAACAAAAACAGCATTTCACAACCATGGATTAAGTCCACTTTTCTgggatgtcatcattttcagcaacctgagaaacaaatcacttcagtttaaattgacatttcccccaagctttaacctttgAAATTAAAGAGATAATTTGTAATTAATTGGGCAATTTAAATATGTTAAGCAGTTAAAATTGAACAATTTAAAAGCAGCCCTATCAGACTCCCTATCCTTATCTACAATCATATAAATTCAAATTTAGTTTGCAAAACCCCCTTTTTAAAGGGAAATCTTGTTACTACCAACAACCTCCCACTTAAATAATAAAACTAGGCAAATTCTGGTGTGTTTTAATTAGGCAAATACGACTTAATTAAAGGTTCCTCCTAGTGAACTATTCCTTTACAAAATATTGAAATCTTTGTACTATATTGACTGAAAGGTCAGGATTCATGGAATGTGTGTAAGACTTCATTCATGGAACGAAGGGTAGAGATGGTTAGAGACTTGGCAGTTTAGGACCTGCTGGAATAAATGGGTGAACAAACTTTTGTAATCTAAACTCTTGACTTGCATGTTTTTCTTTATCCCAGCTCATTCCTTACATATAAGCTCGATCTCAGTATTTGGGTTACTGGTTCAGCAGAAGCCAGGAAAAAACAATAACTTTGTAGTAATGAGAATATTATCCAGCTGTATATTGTTTACTTTATTGTAAATACTGGTAAACAGTGGTCAATAAATAGTTTTATATTCCTTT

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