Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL10P5
Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_6) and its respective parental gene (in scaffold_m13_p_9). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_6:84246858-84247139  UCSC
Strand +
Parental Sequence RPL10_x2
Parental seq. overlap 226 bp
Parental seq. overlap (%) 41.9%
Genomic Region Intergenic
Retrocopy Summary RPL10P5, located on scaffold_m13_p_6:84246858-84247139, is a retrocopy of the parental gene RPL10. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL10
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_9:100890228-100892740
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa RPL10P27
Dog Canis familiaris RPL10P5
Panda Ailuropoda melanoleuca RPL10P15
Cat Felis catus RPL10P24
Pale spear-nosed bat Phyllostomus discolor RPL10P7
Greater horseshoe bat Rhinolophus ferrumequinum RPL10P7
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL10P5
GGGAAAGCCCCAGACCATAGTGGCCAGGGCCCACATTGGCTAATTTATCATGTCATTCCTTACAAAGCTGCAGAACAAAGAGCAAGTGATTTAGGCCCCACACATAGCCAAGTTCAAGTTCCCTGGCTGCCAGGAGAACCATATCTCCAAAAGGTAGTGCTTTACCAAATCTAATGAGGATTAATTTGAAGGCCTGGTAGCTGAAAAGTGGATCATCCCAGATGGCTATGGTGTCAAATACACCTCTAATAATGGCCCCCTGGACAAATGGTGAGCCCTGCA
>RPL10_x2
ATGGGCCGCCGACCCGCCCGATGTTACCGGTACTGTAAGAACAAGCCGTACCCAAAGTCTCGCTTCTGCCGAGGTGTCCCTGCCCTGGAGGCTGCCCGTATCTGTGCCAACAAGTACATGGTGAAAAGCTGTGGCAAAGATGGCTTTCACATCCGAGTGCGGCTCCACCCGTTCCATGTAATTCGCATCAACAAGATGTTGTCCTGTGCCGGGGCTGACAGACTCCAGACAGGTATGCGTGGGGCCTTTGGAAAGCCCCAGGGCACAGTGGCCAGAGTTCACATTGGCCAGGTAATCATGTCTATTCGCACCAAGCTGCAGAACAAGGAGCATGTGATTGAGGCTCTGCGCAGGGCCAAGTTCAAGTTCCCTGGCCGCCAAAAGATCCACATTTCCAAGAAGTGGGGCTTTACTAAGTTTAATGCGGATGAGTTCGAAGACATGGTGGCCGAAAAGCGGCTCATCCCAGATGGCTGCGGGGTCAAATACATCCCTAATCGCGGCCCCCTGGACAAATGGCGGGCCCTGCACTCATGA

Publications

PMID - Link Title