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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL21P47
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Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_6) and its respective parental gene (in scaffold_m13_p_11). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_6:38784693-38784940  UCSC
Strand -
Parental Sequence RPL21_x2
Parental seq. overlap 207 bp
Parental seq. overlap (%) 42.7%
Genomic Region Intergenic
Retrocopy Summary RPL21P47, located on scaffold_m13_p_6:38784693-38784940, is a retrocopy of the parental gene RPL21. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL21
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_11:1655386-1661412
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa RPL21P17
Cow Bos taurus RPL21P28
Horse Equus caballus RPL21P2
Cat Felis catus RPL21P57
Pale spear-nosed bat Phyllostomus discolor RPL21P43
Greater mouse-eared bat Myotis myotis RPL21P67
Kuhl's pipistrelle Pipistrellus kuhlii RPL21P53
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL21P47
AACAAACAAGTTAAGGCCAAGATTCTTGCCAAGAGAATTAATGTACATATTGAACATATTAAGCACTCTAAGAGCCGAGATAATTCTGAAACATGTGAAGGAACCAGAAAAAGGAGAGAACCAAAAAGAGAGGTACTTAGGTTCAACTGAAGCATCAGCCTACTCCACGTAGAGAAGCTCACTTTCGTGGGAACCGATGGAAAAAAGCCTGAGCTGCTAGAACCTATTCTCTATGAATTCATTGCATA
>RPL21_x2
ATGACCAACACAAAGGGAAAGAGGAGAGGCACCCGCTACATGTTCTCTAGACCTTTTAGAAAACATGGAGTTGTTCCCTTGGCCACATACATGCGAATCTACAAGAAGGGTGATATCGTGGACATCAAAGGAATGGGCACTGTGCAAAAAGGCATGCCCCACAAATGCTACCACGGCAAAACCGGGAGAGTCTACAACGTCACCCAGCATGCAGTTGGCATTGTCGTAAACAAACAGGTCAAGGGCAAGATTCTTGCCAAGAGAATTAATGTGCGTATTGAGCATATTAAGCACTCAAAGAGCCGAGATAGCTTCCTGAAACGTGTGAAGGAAAATGATCAAAAAAAGAAGGAAGCCAAAGAAAAAGGTACCTGGGTTCAGCTGAAGCGCCAGCCTGCTCCCCCCAGAGAAGCGCACTTCGTGAGAACCAATGGAAAGGAACCCGAGCTGCTGGAGCCCATTCCCTACGAATTCATGGCATGA

Publications

PMID - Link Title
No publications available for this retrocopy