Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS12P17
Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_15) and its respective parental gene (in scaffold_m13_p_1). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_15:35465062-35465221  UCSC
Strand +
Parental Sequence RPS12_x3
Parental seq. overlap 134 bp
Parental seq. overlap (%) 30.3%
Genomic Region Intergenic
Retrocopy Summary RPS12P17, located on scaffold_m13_p_15:35465062-35465221, is a retrocopy of the parental gene RPS12. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS12
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_1:161628609-161631507
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Orangutan Pongo abelii RPS12P14
Dolphin Tursiops truncatus LOC101324847P13
Dog Canis familiaris RPS12P7
Panda Ailuropoda melanoleuca RPS12P10
Cat Felis catus RPS12P18
Greater mouse-eared bat Myotis myotis RPS12P16
Greater horseshoe bat Rhinolophus ferrumequinum RPS12P16
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS12P17
AGCCCACCTTTGTGTGTTTGCATCCAACTGTCATGAGTCTATGTATATCAAGTTGGGGGAGGCCTTTCGTGCTGAACAACAAATCAACCTAATTCGGGTTCATGACAATAAGGAACTAAGTGGAAGGGCAGGCAGGCCTCTGTAAACTGGACAGAGAGGG
>RPS12_x3
ATGCGGTCGCGTACTGTCTCTTTCCCTGCCGCCGCGGAGGAGCGCGGAGGCACCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTTTACAAGAGGTGCTGAAGACCGCCCTCATCCACGATGGCCTAGCACGTGGAATTCGTGAAGCTGCCAAAGCCTTAGACAAGCGCCAGGCCCATCTGTGTGTGCTTGCATCCAACTGTGATGAACCTATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAACATCAAATCAACCTAATTAAGGTTGATGACAACAAGAAACTAGGGGAATGGGTAGGCCTCTGTAAAATTGACAGAGAGGGAAAACCCCGGAAAGTGGTTGGTTGCAGTTGCGTGGTGGTTAAGGACTATGGCAAAGAGTCTCAGGCCAAGGATGTCATCGAGGAGTACTTCAAATGCAAGAAATGA

Publications

PMID - Link Title