Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ESDP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m20_p_2) and its respective parental gene (in scaffold_m20_p_3). Each line represents a retrocopy.
Species Pipistrellus kuhlii
Coordinates scaffold_m20_p_2:121323903-121324096  UCSC
Strand +
Parental Sequence ESD_x5
Parental seq. overlap 168 bp
Parental seq. overlap (%) 20.9%
Genomic Region Intergenic
Retrocopy Summary ESDP1, located on scaffold_m20_p_2:121323903-121324096, is a retrocopy of the parental gene ESD. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ESD
Full Name N/A
Also known as NULL
Coordinate scaffold_m20_p_3:103400013-103422539
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Mouse lemur Microcebus murinus ESDP2
Cow Bos taurus ESDP2
Sheep Ovis aries ESDP2
Dog Canis familiaris ESDP5
Panda Ailuropoda melanoleuca ESDP1
Cat Felis catus ESDP1
Velvety free-tailed bat Molossus molossus ESDP3
Greater mouse-eared bat Myotis myotis ESDP2
Greater horseshoe bat Rhinolophus ferrumequinum ESDP4
Egyptian rousette Rousettus aegyptiacus ESDP1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ESDP1
ACTTGAAAAACTATCTACAGAATGTACTCTTACATAATGAATAAGCTTCCCTCACTGATAAATGCCAATTTTCCAGTGGACCATGGAAAATTGGCTATTTTTGGCCACTCTGTGGGAGGCCATGGAGCTCTTACTTGTGCTTTGACGAATCCAGGAAAATGCAAATCTGTGTCAGCATTTGCTCCAATTTGCAA
>ESD_x5
ATGGCATTGAAACAGATTTCCAGCAACAAATGCTTTGGGGGATTGCAGAAAGTTTTTGAACATGACAGTGTTGAACTGAACTGCAAAATGAAATTTGCTATCTACTTGCCACCAAAGGCAGAAACTGGAAAATGCCCTGCTCTGTATTGGCTGTCTGGTTTAACTTGCACAGAACAGAATTTTATATCAAAATCTGGTTATCATCAGGCTGCCTCAGAACATGGCCTTGTTGTCATTGCTCCAGATACCAGTCCTCGTGGCTGCAATATTAAAGGAGAAGATGAGAGCTGGGACTTTGGCACTGGTGCTGGGTTTTACGTGGATGCCACTGAACATCCTTGGAAAACTAACTACAGAATGTATTCTTATGTAACGGAGGAGCTTCCTCAACTCATAAATGCCAATTTTCCAGTGGACCCCCAAAGGATGTCTATTTTTGGCCACTCCATGGGAGGCCATGGAGCTCTGATTTGTGCTTTAAAGAATCCTGGAAAATACAAATCTGTGTCAGCATTTGCTCCAATTTGCAATCCAGTGCTTTGTCCTTGGGGCAAAAAAGCCTTCAGTGGATATTTGGGAACAGATCAAAGTAAGTGGAAGGCTTATGATGCTACTCATCTTGTGAAGTCCTTTCCAGGTTCTCAGCTTGACATACTAATTGATCAAGGAAAAGACGACCAGTTCCTTTCAGATGGACAGTTACTGCCTGATAACTTCATCGCTGCCTGTGCGGAAAAGAAAACCCCTGTTGTCTTTAGATTACAAGAGCTACTACTTCATCGCTACCTTTATTACTGA

Publications

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