RCPedia: Rtcs

Summary

Retrocopy Name	FTH1P1	Plot displaying the genomic locations of a retrocopy (in scaffold_m20_p_8) and its respective parental gene (in scaffold_m20_p_59). Each line represents a retrocopy.
Species	Pipistrellus kuhlii
Coordinates	scaffold_m20_p_8:43619070-43619320 UCSC
Strand	+
Parental Sequence	FTH1_x3
Parental seq. overlap	140 bp
Parental seq. overlap (%)	30.3%
Genomic Region	Intragenic (SETD7)
Retrocopy Summary	FTH1P1, located on scaffold_m20_p_8:43619070-43619320, is a retrocopy of the parental gene FTH1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	FTH1
Full Name	N/A
Also known as	NULL
Coordinate	scaffold_m20_p_59:567586-569791
Strand	-
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	FTH1P24
Chimpanzee	Pan troglodytes	FTH1P9
Bonobo	Pan paniscus	FTH1P9
Gorilla	Gorilla gorilla	FTH1P9
Orangutan	Pongo abelii	FTH1P8
Gibbon	Nomascus leucogenys	FTH1P6
Green monkey	Chlorocebus sabaeus	FTH1P4
Crab-eating macaque	Macaca fascicularis	FTH1P5
Rhesus	Macaca mulatta	FTH1P5
Baboon	Papio anubis	FTH1P3
Marmoset	Callithrix jacchus	FTH1P10
Mouse lemur	Microcebus murinus	FTH1P7
Dolphin	Tursiops truncatus	FTH1P7
Horse	Equus caballus	FTH1P3
Panda	Ailuropoda melanoleuca	FTH1P3
Golden snub-nosed monkey	Rhinopithecus roxellana	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Cow	Bos taurus	Without Homology
Sheep	Ovis aries	Without Homology
Dog	Canis familiaris	Without Homology
Cat	Felis catus	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
Egyptian rousette	Rousettus aegyptiacus	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>FTH1P1
CGAAGCTGCAGAACCAACGAGGTGGCTGAATCTTCCCTCAGGATAGCAAGAAACCGGACCCTGAGGTCTGGGAGAGCCGGCTAAGGCACGGAGTGTGCGGAACACTTGGAAAAAGGCGTGTCAGTCACTGCTGCAACTGCACCAACCGGCCCCTGACACAAATGAGCCCACG

>FTH1_x3
ATGACGTCCGCCGTGCCCGCctcgcagTCTTActactttgaccgcgatgatgtggctctgaagaactttgccaaatatttccttcaccaatctcacgaggagagggaacatgccgagaagctgatgaagctgcagaaccagcgcggcggccgaatcttccttcaggaTATCAAGAAACCAGACCGTGACGACTGGGAGAACGGGCTGAATGCAATGGAGTGTGCCCTGCACTTGGAGAAAAGTGTGAATCAGTCACTACTGGACCTGCACAAGCTGGCCACTGACAAAAATGACCCCCACTTGtgtgacttcctggagacgcactacctgacggagcaggtgaaatccatcaaagaactgggtgaccacgtaaccaacttgcgcaggatgggggcccccgaagctggcatggccgagtatctcttTGACAAGCACACCCTGGGCAGCTGTGACGAGAGCTAA

>FTH1_x3 

ATGACGTCCGCCGTGCCCGCctcgcagTCTTActactttgaccgcgatgatgtggctctgaagaactttgccaaatatttccttcaccaatctcacgaggagagggaacatgccgagaagctgatgaagctgcagaaccagcgcggcggccgaatcttccttcaggaTATCAAGAAACCAGACCGTGACGACTGGGAGAACGGGCTGAATGCAATGGAGTGTGCCCTGCACTTGGAGAAAAGTGTGAATCAGTCACTACTGGACCTGCACAAGCTGGCCACTGACAAAAATGACCCCCACTTGtgtgacttcctggagacgcactacctgacggagcaggtgaaatccatcaaagaactgggtgaccacgtaaccaacttgcgcaggatgggggcccccgaagctggcatggccgagtatctcttTGACAAGCACACCCTGGGCAGCTGTGACGAGAGCTAA

Publications

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