Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FNBP1P1
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Plot displaying the genomic locations of a retrocopy (in chr2A) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr2A:34377546-34377729  UCSC
Strand -
Parental Sequence XM_024252848.1
Parental seq. overlap 153 bp
Parental seq. overlap (%) 5.7%
Genomic Region Intergenic
Retrocopy Summary FNBP1P1, located on chr2A:34377546-34377729, is a retrocopy of the parental gene FNBP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FNBP1
Full Name N/A
Also known as -
Coordinate chr9:103800891-103957340
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FNBP1P1
Chimpanzee Pan troglodytes FNBP1P1
Bonobo Pan paniscus FNBP1P1
Gorilla Gorilla gorilla FNBP1P1
Gibbon Nomascus leucogenys FNBP1P1
Green monkey Chlorocebus sabaeus FNBP1P1
Crab-eating macaque Macaca fascicularis FNBP1P1
Rhesus Macaca mulatta FNBP1P1
Baboon Papio anubis FNBP1P1
Golden snub-nosed monkey Rhinopithecus roxellana FNBP1P1
Dog Canis familiaris RPS13P4
Cat Felis catus RPS13P3
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FNBP1P1
AAATACAGATGGAGATGGATCAAAGAAATTGCATAACAAAAATGAAAAACATGTACGAAAGGAATCTTCAAATGGGAGACACAGCCAGTTTGAGTCACAAATTAACAAAATTCAGACAAAAATATAGAAAAACAAGAGGCCCAGAAATTTGAAGTCTAGCTGCCTGAGGTTGAAGGCAGGCTCA
>XM_024252848.1
TCTCCGGGCGTAGGGCGGGCGGGCGCTGCGGCGGCCGCGGCTGCTGCTTCTTCGGGCCATTTTGCTGTGGAGCGGCGGGGAGGAGGAGCCGCCGAGGAGACCCCGGGCGAGGATCTACGAGCCGAAGGAGGCCGCGCGGACTCCGGGCTTTCCGCCGTCGCGGGGATCTCGGGGGGCAAAGGGATCGCCGGGGAGGGGGACCAGAGAGCCGCGCCCGCCGCGCGGAGCGCCCCTTCGCGTCCCCTGCACCATGAGCTGGGGCACCGAGCTCTGGGATCAGTTTGACAACTTAGAAAAACACACACAGTGGGGAATTGATATTCTTGAGAAATATATCAAGTTTGTGAAAGAAAGGACAGAGATTGAACTCAGCTATGCAAAGCAACTCAGGAATCTTTCAAAGAAGTACCAACCTAAAAAGAACTCGAAGGAGGAAGAAGAATACAAGTATACGTCATGTAAAGCTTTCATTTCCACCCTGAACGAAATGAATGATTACGCGGGGCAGCATGAAGTTATCTCCGAGAACATGGCGTCACAGATCATTGTGGACTTGGCACGCTATGTTCAGGAACTGAAACAGGAGAGGAAATCAAACTTTCACGATGGCCGTAAAGCCCAGCAGCACATCGAGACTTGCTGGAAGCAGCTTGAATCCAGTAAAAGGCGATTTGAACGCGATTGCAAAGAGGCGGACAGGGCGCAGCAGTACTTTGAGAAAATGGACGCTGACATCAATGTCACAAAAGCGGATGTTGAAAAGGCCCGACAACAAGCTCAAATACGTCACCAAATGGCAGAGGACAGCAAAGCAGATTACTCATCCATTCTCCAGAAATTCAACCATGAGCAGCATGACTATTACCATACTCACATCCCCAACATCTTCCAGAAAATACAAGAGATGGAGGAAAGGAGGATTGTGAGAATGGGAGAGTCCATGAAGACATATGCAGAGGTTGATCGGCAGGTGATCCCAATCATTGGGAAGTGCCTGGATGGAATAGTAAAAGCAGCCGAATCAATTGATCAGAAAAATGATTCACAGCTGGTAATAGAAGCTTATAAATCAGGGTTTGAGCCTCCTGGAGACATTGAATTTGAGGATTACACTCAGCCAATGAAGCGCACTGTGTCAGATAACAGCCTTTCAAATTCCAGAGGAGAAGGCAAACCAGACCTCAAATTTGGTGGCAAATCCAAAGGAAAGTTATGGCCGTTCATCAAAAAAAATAAGCTTATGTCCCTTTTAACATCCCCCCAtcagcctccccctccccctcctgcctctgcctcaccctctgcTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCACCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGCCTAAAGCGTGGGCTTTCTCTCAAGCTGGGTGCAACACCGGAGGATTTCAGCAACCTCCCACCTGAACAAAGAAGGAAAAAGCTGCAGCAGAAAGTCGATGAGTTAAATAAAGAAATTCAGAAGGAGATGGATCAAAGAGATGCCATAACAAAAATGAAAGATGTCTACCTAAAGAATCCTCAGATGGGAGACCCAGCCAGTTTGGATCACAAATTAGCAGAAGTCAGCCAAAATATAGAGAAACTGCGACTAGAGACCCAGAAATTTGAGGCCTGGCTGGCTGAGGTTGAAGGCCGGCTCCCAGCACGCAGTGAGCAGGCGCGCCGGCAGAGCGGACTGTACGACAGCCAGAACCCACCCACAGTCAACAACTGCGCCCAGGACCGCGAGAGCAGCCCAGATGGCAGTTACACAGAGGAGCAGACTCAGGAGAGTGAGGTGAAGGTGCTGGCCACGGATTTTGACGACGAGTTTGATGATGAGGAGCCCCTCCCTGCCATAGGGACGTGCAAAGCTCTCTACACATTTGAAGGTCAGAATGAAGGAACGATTTCCGTAGTTGAAGGAGAAACATTGTATGTCATAGAGGAAGACAAAGGCGATGGCTGGACCCGCATTCGGAGAAATGAAGATGAAGAGGGTTATGTCCCCACTTCATATGTCGAAGTCTGTTTGGACAAAAATGCCAAAGGTGCTAAGACTTATATTTAATACCATaaaaaaaaaaaaaaaaaactttaaaaaaaTGGAGTTGTTTCTCCCCACAACCGTGACTGTTACAGGCAGTTCCTCAAGAGACTGGCTGGCAAGCACCGTTGTGCGCGTTCTCCTGTAGTCTCACGTGGACTTCAGGGTCCGGGCACCTGAATTGCCTTGTCTAGTTTGGGCTGTAATCAAGTTTCACTTGCTGATGAAATTTTATGTGGAAAGCTGCCAACCGCCAGCTTACAGCTGTGTCATTCGAAATCTGATAAACATTTCTTCTTTTGGCAGTATCTGTAGATTAAAAAAAAAAAGTTGCATTGTAGCTTCTCATCTTTCTGAATTTAAAAGCCGGCACACATCATGCAGGTGCCAAAGACTTCCCTACTCTTGTTTATATCTAGTATCCACCATACACTGAGCTACATTAGGAGGTTACAGATTGTAACTTAATAAACTGAACTGTGTTAGTTTGTTAAATTGTATGCTCATTCACTTGGGAGGAAGTCACAAGTAAAATAACATCTCCTCCTTCTTGACTAAAGCAGTAAATAAGATTCTTATATTGGCA

Publications

PMID - Link Title
No publications available for this retrocopy