Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name INSIG2P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m20_p_6) and its respective parental gene (in scaffold_m20_p_7). Each line represents a retrocopy.
Species Pipistrellus kuhlii
Coordinates scaffold_m20_p_6:33341893-33342785  UCSC
Strand -
Parental Sequence INSIG2_x1
Parental seq. overlap 399 bp
Parental seq. overlap (%) 58.2%
Genomic Region Intergenic
Retrocopy Summary INSIG2P1, located on scaffold_m20_p_6:33341893-33342785, is a retrocopy of the parental gene INSIG2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name INSIG2
Full Name N/A
Also known as NULL
Coordinate scaffold_m20_p_7:73356382-73372574
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CETN2P1
Chimpanzee Pan troglodytes CETN2P1
Bonobo Pan paniscus CETN2P1
Gorilla Gorilla gorilla CETN2P1
Orangutan Pongo abelii CETN2P1
Gibbon Nomascus leucogenys CETN2P1
Green monkey Chlorocebus sabaeus CETN2P1
Crab-eating macaque Macaca fascicularis CETN2P1
Rhesus Macaca mulatta CETN2P2
Baboon Papio anubis CETN2P2
Golden snub-nosed monkey Rhinopithecus roxellana CETN2P1
Marmoset Callithrix jacchus CETN2P3
Mouse lemur Microcebus murinus CETN2P3
Rabbit Oryctolagus cuniculus CETN2P2
Pig Sus scrofa CETN2P2
Cow Bos taurus CETN2P1
Sheep Ovis aries CETN2P1
Dolphin Tursiops truncatus CETN2P1
Horse Equus caballus CETN2P1
Dog Canis familiaris CETN2P1
Panda Ailuropoda melanoleuca CETN2P1
Cat Felis catus CETN2P1
Pale spear-nosed bat Phyllostomus discolor CETN2P2
Greater mouse-eared bat Myotis myotis INSIG2P2
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>INSIG2P1
GTGATTGGGTTATTATACCCCTGCATTGACAAGCATCTAGGAGAACCACATAAATTTAAAAGAGGGTGCTCCAGTGTAACGCGGTGTCACCGTAGCCACCTTTGTTGGTAGAAATCATGCCAACACTAAAGTGGACTTTGAGGAAAACATACAGTTGTCTCTCACACTGGCTGCACTCTCCATTAAACTGTGGTGGACTTTTGATAGATCTCAAACTGGTTTTGGCCTTGGAATAGGAATTGCTTTCTTGGCAACCTTGGTCACTCAACTGCTAGACTATAATGGTGTTAATCATAATTCTCCAGATTTTCTCTATGTTCGTTCCTGGTTACCATGTATATTTTTTGCTGAAGGCATAACAATGGGAAATATTGGTCGACAACTGGCAATGTCTGAATGTAAAGTTATCACAGAAAAAAATCTCATCAGGAATGAA
>INSIG2_x1
ATGGCAGAAGGAGAGACAGAGTCACCTGGGCCCAAAAAGCATGGTCCTTACATCTCATCTGTAACCAGCTGGAGTGTAAATTTGATGATTCGAGGAGTGGTGCTGTTTTTCATTGGAGTATTTCTGGCATTAGTGTTAAACTTACTTCAGATTCAGAGGAACGTGACACTTTTCCCACCTGATGTGATTGCAAGCATCTTTTCCTCAGCATGGTGGGTGCCGCCGTGCTGTGGCACGGCCTCAGCGGTGATTGGGTTATTATACCCCTGCATTGACAGGCATCTAGGAGAACCACATAAATTTAAAAGAGAGTGGTCCAGTGTAATGCGGTGCGTAGCCGTCTTTGTTGGTATAAATCATGCCAGTGCTAAAGTGGACTTTGATAACAACATACAGTTGTCTCTCACACTGGCTGCTCTCTCCATTGGACTGTGGTGGACTTTTGATAGATCTCGAACTGGTTTTGGCCTCGGAGTAGGAATTGCTTTCTTGGCAACCTTGGTCACTCAACTGCTCGTCTATAATGGTGTTTATCAATATACTTCTCCAGATTTTCTCTATGTTCGCTCTTGGTTACCATGTATATTTTTTGCTGGAGGCATAACAATGGGAAATATTGGTCGACAACTGGCAATGTATGAATGCAAAGTGATCGCAGAAAAATCTCATCAGGAATGA

Publications

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