Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LIN28AP3
Plot displaying the genomic locations of a retrocopy (in scaffold_m20_p_9) and its respective parental gene (in scaffold_m20_p_2). Each line represents a retrocopy.
Species Pipistrellus kuhlii
Coordinates scaffold_m20_p_9:4458514-4459299  UCSC
Strand -
Parental Sequence LIN28A_x1
Parental seq. overlap 487 bp
Parental seq. overlap (%) 78%
Genomic Region Intergenic
Retrocopy Summary LIN28AP3, located on scaffold_m20_p_9:4458514-4459299, is a retrocopy of the parental gene LIN28A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LIN28A
Full Name N/A
Also known as NULL
Coordinate scaffold_m20_p_2:180706236-180717317
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Baboon Papio anubis LIN28AP3
Mouse lemur Microcebus murinus LIN28AP10
Rabbit Oryctolagus cuniculus LIN28AP14
Cow Bos taurus LIN28AP4
Sheep Ovis aries LIN28AP2
Dolphin Tursiops truncatus LIN28AP7
Horse Equus caballus LIN28AP1
Panda Ailuropoda melanoleuca LIN28AP2
Pale spear-nosed bat Phyllostomus discolor LIN28AP4
Velvety free-tailed bat Molossus molossus LIN28AP6
Greater horseshoe bat Rhinolophus ferrumequinum LIN28AP1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pig Sus scrofa Without Homology
Dog Canis familiaris Without Homology
Cat Felis catus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LIN28AP3
GGCGGAGGACCCGCAGCTGCTGCACGAGCCGAGCTGGCATCTGTAAGTGGTTCAACCTGCGAATGGGGTTCAGCTTCATGTCCCTGACCACCCACGCTGGGGTCGCGCTCCACCCACCCGTGGATGTCTTTGTGCACCAGAGTCAACTGCACATGGAGGACTTCCAGAGCCTGAAGGAAGGCGAGGCAGTGAAGTTCACCTTTAAAAGAAGTCCACCCAGGGCCTGGAATCTATCCGAGTCACTGGCCCTGGTGGGGTATTCTGTATTGGGAGTGAGAGGCGGCCAAAAGGGAAGAACATGCAGAGGCACAGATCAAAGGGAGGCAGGTGCTACCACTGTGGAGGTCTAGACCATCATGCCAAGGAATGCAAGCTCCCGCCCCAGCCCAAGAAGTGCCACTTCTGCCAAAGCATCAGCTGTAGGGTGGCCTCCTGTCCACTGAAGGCCCAGCAGGCCCCCAGCTCACAGGGAAAGCCAGCCTACTTCTGGGATGAAGAAGAAGAGATCCATAGCCCTGCCCTGCTCCCAGATGCCCAGAATG
>LIN28A_x1
ATGGGCTCCGTGTCCAACCAGCAGTTTGCAGGTGGCTGCGCCAAGGCGCCGGAGGAGGCGCGGGAGGACGCGGCGCGGCCGGCGGAGGAGCCGCAGCTGCTTCACGGCGCCGGCGTCTGCAAGTGGTTCAACGTGCGCATGGGCTTCGGCTTCCTGTCCATGACCGCCCGCGCGGGGGTCGCGCTCGACCCGCCCGTGGACGTCTTTGTGCACCAGAGTAAACTGCACATGGAGGGCTTCCGGAGCCTGAAGGAGGGCGAGGCGGTGGAGTTCACCTTTAAAAAGTCGGCCAAGGGCCTGGAATCCATCCGAGTCACCGGCCCCGGTGGGGTGTTCTGTATTGGGAGTGAGAGGCGGCCCAAAGGGAAGAACATGCAGAAGCGCAGATCGAAAGGAGACAGGTGCTACAACTGTGGAGGTCTAGACCATCATGCCAAGGAGTGCAAGCTCCCGCCCCAGCCCAAGAAGTGCCATTTCTGCCAAAGCATCAGCCATATGGTGGCCTCCTGTCCACTGAAGGCCCAGCAGGCCCCCAGCTCACAGGGAAAGCCAGCCTACTTCCAGGATGAAGAAGAAGAGATCCATAGCCCGGCCCTGCTCCCAGAATCCCAGAATTGA

Publications

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