Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PPIAP35
Plot displaying the genomic locations of a retrocopy (in scaffold_m20_p_19) and its respective parental gene (in scaffold_m20_p_160). Each line represents a retrocopy.
Species Pipistrellus kuhlii
Coordinates scaffold_m20_p_19:20101966-20102461  UCSC
Strand +
Parental Sequence PPIA_x1
Parental seq. overlap 486 bp
Parental seq. overlap (%) 98%
Genomic Region Intergenic
Retrocopy Summary PPIAP35, located on scaffold_m20_p_19:20101966-20102461, is a retrocopy of the parental gene PPIA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PPIA
Full Name N/A
Also known as NULL
Coordinate scaffold_m20_p_160:145295-148292
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PPIAP91
Chimpanzee Pan troglodytes PPIAP88
Bonobo Pan paniscus PPIAP88
Gorilla Gorilla gorilla PPIAP88
Orangutan Pongo abelii PPIAP87
Gibbon Nomascus leucogenys PPIAP85
Crab-eating macaque Macaca fascicularis PPIAP28
Rhesus Macaca mulatta PPIAP25
Baboon Papio anubis PPIAP43
Golden snub-nosed monkey Rhinopithecus roxellana PPIAP41
Dog Canis familiaris PPIAP11
Sloth Choloepus didactylus PPIAP32
Green monkey Chlorocebus sabaeus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PPIAP35
CATGGTGAATCCGACCGTGTTCTTCGACATCGCTGCGGATGGCGAGCCCTTGGGCAGCGTCTCCTTCGAGCTGTTTGCAGACAAAGTTCCAAAGACAGCAGAGAACTTCCGTGCACTGACAACTGGGGAGAAAGGATTTGGTTATAAAGGTTCTTGCTTTCACAGAATTATTCTGGGATTTATGTGCCAGGGTGGTGACTTCACACGCCATAATGGCACAGGCGGCAAGTCCATCTATGGGGAGAAGTTTGCGGACGAGAACTTCATCCTGAAACACACAGGCCCTGGCATCCTATCCATGGCGAATGCTGGGCCCAACACAAACGGCTCCCAGTTTTTCATCTGCACTGCCAAGACCGAATGGTTGGATGGCAAGCATGTGGTCTTCCGCAAGGTGAAAGAAGGCATGGATATTGTGACGGCCATGGAGCACTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACCATTGCTGACTGTGGGCAACTCTAA
>PPIA_x1
ATGGTGAATCCGACCGTGTACTTCGACATCGCCGCGGATGGCGAGCCCTTGGGCCGCGTCTCCTTCGAGCTGTTTGCAGACAAAGTTCCAAAGACAGCAGAGAACTTCCGTGCACTGACAACTGGGGAGAAAGGATTTGGTTATAAAGGTTCTTGCTTTCACAGAATTATTCCGGGATTTATGTGCCAGGGTGGTGACTTCACACGCCATAATGGCACAGGCGGCAAGTCCATCTATGGGGAGAAGTTTGCGGACGAGAACTTCATCCTGAAACACACAGGCCCTGGCATCCTATCCATGGCGAATGCTGGGCCCAACACAAACGGCTCCCAGTTTTTCATCTGCACTGCCAAGACCGAATGGTTGGATGGCAAGCATGTGGTCTTCGGCCAGGTGAAAGAAGGCATGGATATTGTGACGGCCATGGAGCGCTTTGGGTCCAGGAATGGCAAGACCAGCAAGATGATCACCATTGCCGACTGTGGGCAACTCTAA

Publications

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