Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS17P20
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr16:28360702-28361182  UCSC
Strand +
Parental Sequence NM_001265804.1
Parental seq. overlap 426 bp
Parental seq. overlap (%) 85.5%
Genomic Region Intergenic
Retrocopy Summary RPS17P20, located on chr16:28360702-28361182, is a retrocopy of the parental gene RPS17. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS17
Full Name N/A
Also known as RPS17L
Coordinate chr7:63180788-63184843
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS17P25
Chimpanzee Pan troglodytes LOC112207979P16
Bonobo Pan paniscus RPS17P17
Gorilla Gorilla gorilla RPS17P7
Orangutan Pongo abelii RPS17P20
Green monkey Chlorocebus sabaeus RPS17P9
Crab-eating macaque Macaca fascicularis RPS17P21
Baboon Papio anubis LOC101007228P17
Golden snub-nosed monkey Rhinopithecus roxellana RPS17P27
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS17P20
TTTTACCAAGGACCCGCCAACATGGGGCGCGTTCGCATCAAAACTTTGAAGTAAAGAAGGTGGCCCGGGTCATTATAGAAAAGTACTACATTCGCCTGGGCAAAGACTTCCATACGCACAAGCGCGTGTGTGAGGAGATCGCCATTATCCTCAGCAAGAAGCCCCGCAACAAGATAGCAGGCTATGTCACGCATCTGATAAAGCAGATTCAGAGGGGGCCAGTGAGAGAGAGGTATCTCCATCAAGCTGCAGGAGGAGGAGAGAGAAAGGAGAGACAATTGTGTTCCCGAGGTCTCAGCTCTGGATCGGGAGATCATTGAAGTAGAATCCTGACACTAAGGAATGCAGAAGATTTTGGACTTCGGCAGTCTGTCCAACCTGTAGGTCACCCAGCCTACAGTTCGGATGAATTTCAAAACGCCTCGGGGAGCTGTTTGAGTCTTTCTGTAATGCTGTAATATTTTCAATACACCTGGGACAA
>NM_001265804.1
CCTGTTTCCTCTTTACCAAGGACCCGCCAAGATGGGCCGCGTTCGCACCAAAACCGTGAAGAAGGCGGCCCGGGTTATCATAGAGAAGTATTACACGCGCCTGGGCAACGACTTCCACACGAACAAGCGCGTGTGCGAGGAGATCGCCATTATCCCCAGCAAGAAGCTCCGCAACAAGATAGCAGGCTATGTCACCCATCTGATGAAGCGGATTCAGAGAGGCCCTGTAAGAGGTATCTCCATCAAGCTGCAGGAGGAGGAGAGAGAAAGGAGAGACAATTACGTTCCCGAGGTCTCAGCCCTGGATCAGGAGATAATTGAAGTAGATCCTGACACTAAGGAAATGCTGAAGCTTTTGGACTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAGCCTACAGTTGGGATGAATTTCAAAACGCCTCGGGGACCTGTTTGAATTTTTTCTGCAGTGCTATATTATTTTCAATAAATCTGGGACAACAGCC

Publications

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