Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name EMC3P2
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_19) and its respective parental gene (in scaffold_m19_p_13). Each line represents a retrocopy.
Species Myotis myotis
Coordinates scaffold_m19_p_19:29581324-29582013  UCSC
Strand +
Parental Sequence EMC3_x3
Parental seq. overlap 509 bp
Parental seq. overlap (%) 24.8%
Genomic Region Intragenic (CYB5B)
Retrocopy Summary EMC3P2, located on scaffold_m19_p_19:29581324-29582013, is a retrocopy of the parental gene EMC3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name EMC3
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_13:22254085-22268856
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus EMC3P1
Crab-eating macaque Macaca fascicularis EMC3P1
Rhesus Macaca mulatta EMC3P1
Baboon Papio anubis EMC3P1
Golden snub-nosed monkey Rhinopithecus roxellana EMC3P1
Marmoset Callithrix jacchus EMC3P3
Mouse lemur Microcebus murinus EMC3P1
Dolphin Tursiops truncatus EMC3P3
Horse Equus caballus EMC3P1
Pale spear-nosed bat Phyllostomus discolor EMC3P1
Kuhl's pipistrelle Pipistrellus kuhlii EMC3P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>EMC3P2
TGACAGTTAAATCCTAATTCAAAGCACAGTTAGGTAAAATAGAAATTATATTCCCAAGCAGTCCTTCTTCACATGGAAATATTACTTCAACCACCCAGAGGACAGATTTTTCAAAAAAATAAAATAATGGGGAAATAGAACCGGCTTCTCCTATGAGTGATCCCACTATGCTCACTGACATAATGAAAGGGAATTAACAAATGTCCTCCCCATGATTCTTATCTTGGTAAATGGATCAACAAGACATTCTCAAGCTTTGTTACAAGCAAAGTCGTAGTTCCACTGACCCTATTTTAAGTCTATGCTACTGCAAGGAATCAAACTACTCACATTAATTGCATCCTGGTACTTCTGCTATGTATTTGGGCTTCAGAGCATTTACTCTCTTTGGTTCTGGGCCAAGATAATGCCAATGACCAATCAGAAATGATGCAAGAGCAATGTTGGAGCAGCCATGGCCGTGCATGCAGCAGACACCAACAAAATTTTCAAGACAAAGTGGGAAGTTTTGGAGCTAATGGATCACCAGTGGGCACTAGATTATGTCAAAGAGGAACTCATGGTCAAAGATCTCCACTTTGAAAGCATGTTCAAATAGGAATTACAGATCTCTATTTTTTTAAGACCAAGCACGGATTAGCTCTGCTAGGAACTTGGAGTAGCCCTTCACCTTGTACCTTTTGTTTGAGC
>EMC3_x3
GGCCGCGCGGCCCGGCGAGGGTCAGTACGCCGGGGCCGAACCTGCAGTGGGATCCAGCGCCCGCCAGGCTGAGGGCGTGAGAAGGCTCGGAGGCGAGCTCGAGTGGGAGCCCGGCGCCAGTGGTGGGAGGAGAAACCCAGCGACACCGGGTCGGGAGCTGGCGCTGTGTGAAGATGGCGGGGCCGGAGCTGCTGCTCGACTCCAACATCCGCCTCTGGGTGGTCCTGCCCATCGTGATCATCACCTTCTTCGTGGGCATGATCCGCCACTACGTGTCCATCCTGCTGCAGAGCGACAAAAAGCTCACCCAGGAACAAGTCTCCGACAGTCAAGTCCTAATTCGAAGCAGAGTCCTCAGGGAAAATGGAAAATACATTCCCAAACAGTCTTTCCTGACACGAAAATATTATTTCAACAACCCAGAGGATGGATTTTTCAAAAAAACTAAAAGGAAGGTAGTACCTCCTTCTCCTATGACTGACCCCACTATGCTAACAGATATGATGAAAGGCAATGTAACAAACGTTCTCCCTATGATTCTTATTGGCGGATGGATCAACATGACATTCTCAGGCTTTGTCACAACTAAGGTCCCATTTCCACTGACCCTCCGTTTTAAGCCGATGCTACAGCAAGGAATTGAATTACTCACATTAGATGCATCCTGGGTGAGTTCTGCATCCTGGTATTTCCTCAATGTCTTTGGGCTTCGGAGCATTTACTCTCTGATTTTGGGCCAAGATAATGACAGAGTGGGAAGCCTTGGAGCTGACAGATCACCAGTGGGCCCTAGATGATGTCGAAGAGGAACTCATGGCCAAAGACCTCCACTTCGAAGGCATGTTCAAAAAGGAATTACAGACCTCTATTTTTTGAAGACCAAGCAGGAATTAGCTGTGTCAGGAACTCGGAGTAGCGCTTAACCTTGTAACTTTCGTTTGAGCAGGAGCCTCTCGGAATAAAAAGGAGGATGCATGAGCTGGCGGATGTGCAGCAAGGATCATTCTTGTCTGAGCCGGTTCCCCTTTATGTATGAAACTAGAGGAAACACAAGGAGTGTGTGCTGGGTGACTTACCCAGAAACAGCTATTTTTAAAATGTTTTAAATTTTCCATCTGGTGACTCTAGTAATGAAAGTCAGAGAAAGGGGGAAAACTCAAGCTAGTGATAATATATAAAACTTAGCAAAAATACAGTCTTTGGAAAAGGAGTTTTCAATTATACCTAATTATTATGTGTAGTCAGCCTGACTTCTAACCACAGTAGACTCCTTTTTTCTTGGGATCCAAACACCCTGCATTTTACCTTTAATTTTTTGTTAGTATTTTTATAACTTTCTTTACACAAATAATACATTTTCATTACAGAAAATTTAAGAACTATGGATGAGCAAAAAGTGAAGCCCCCTGTATTCATTTTGAGCCTATagaatgacataaaaagcaaatgtgtcaaaaccttattcagataaatcttcttcagagtgaatacccagggccaggacagacttaggaaaccttcgctatctcataatactgtccagtgaaaatcagtgacggtgagacactgccggattctcaagtgcctttgggatcattaaaaacaggttaaataatgtGAGGTCTTGATCTGGAGTTCAGAATACATCAAATCCATTGACAAATCAATGGTGCTATACTGTATATGGCTGCTCAGTTGAATGAAAGCATTTCCCAGTCATTCTGCATAAGAGAGTTTACGTATCACTGTAAGAAGTGAGAGAGGGCGATTGCTGGCAGACACATAGTTAAGGGTTGCCCAGGAAGAATTCTGTCTGGGTTAACTCCCAGGGAAGTGGCAGGGTGCCATTTCTGTACCAAGAGGTGAATGTAATTTGCATGTTGAACGTTGTAATCAAGAACAAACAACTCTTGACTCTACAAATTAAACCATCCTGTTTTCTCTTCTTTGCCTGT

Publications

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