Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name SDHCP10
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr18:11054912-11055980  UCSC
Strand -
Parental Sequence XM_028846281.1
Parental seq. overlap 919 bp
Parental seq. overlap (%) 57.1%
Genomic Region Intragenic (CCDC102B)
Retrocopy Summary SDHCP10, located on chr18:11054912-11055980, is a retrocopy of the parental gene SDHC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SDHC
Full Name succinate dehydrogenase complex subunit C
Also known as -
Coordinate chr1:89588021-89632810
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SDHCP1
Chimpanzee Pan troglodytes SDHCP5
Bonobo Pan paniscus SDHCP6
Gorilla Gorilla gorilla SDHCP5
Orangutan Pongo abelii SDHCP5
Gibbon Nomascus leucogenys SDHCP2
Green monkey Chlorocebus sabaeus SDHCP9
Crab-eating macaque Macaca fascicularis SDHCP10
Baboon Papio anubis LOC101006239P9
Golden snub-nosed monkey Rhinopithecus roxellana SDHCP10
Marmoset Callithrix jacchus SDHCP3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SDHCP10
AAGACATGTTGGCTGTCATTGCCTCGGAGCCCAATTTAGCCCTCTGCTCTATATCAGAAAAGCTGCTCCTTTGGAAACCTCAGTCAAAAAAGAGATGGAGTGGCTCTGGAATAAGAACATAGGTTCAAACTGCCCTTTATCTTCCCATAGCACTATCTACAGTTGGTCTATTCCCATCGCGATGTCCATTTGCCACCATGGCACTGGTATTGCTTTGAGTGCATGGGTCTGTCTTTTTGGTATCGGCCCTTTTGCTCCCCGGGAACTTTGAGTATTATTTGAAACTTGTGAAGTCCCTGTGTCTGGGGCCAGCACCGATCCACCACAGCTAAGTTTGTACTCCTCTTCCCTCTCATGTATCACACCTGGAGTGCGATCTCACACTTGATGTGGTATCTGGGAATAGCCTTGAAGCCCAGCTACATCAGTCTAGAGTGGTTGTCTTGGTTCTTACTGTGTTGTCGTCTGTAGGGCTGGCAGCTATATGAAGAGCTGATGTTCCCAACGTCATCTTTCCACACACTATTAAGTTCACATATCTTCCCATTTGTCACTCTTATCTCCAGTCTGGGCCAAGTTCTCCTGATTTATTTAGATCCTTTAGGGCTTTCAGATCCCCTGGAGCTCAGTAGCAGTAGATCATTGTGGTGGAAAAGAGTCCAGTTTTACCCTTGTTTCTAAATATGGAGTGGCTGCAAAATCTTCCCTTTTCCTGCCCACAACTTGCCTACTCTGGGCATAGAAGCACTTATTCTCTCTCCAACTGGGCTTTGATTTGTGCTGAGTCAGCTTTTGGCTCCTTCTCCCTGAGACAGTGGAAACAGACAGCTCTGTGGCCTCTGCCCTGGGGGCTGGGGGTGAGACTTTTGGTGCCACTGCCTATGGGTTGTTGGCCTAAAGGACAATTCTGTTCATTGGTCATAACCCATGCCTTTAACACCTACACAGTGTTATTGAAAGAAGAGAGAGGAGAGAGTGGAAGGGAATTAATCTATCCCAGCTGGAGGGAGATAAAGAGGGCTACTTAGTTCTTGGAGATGCCATTTTTGGGGAGAAAATATATCGCTTC
>XM_028846281.1
ACTTCCGTCCAGACCGGAACCCAAGATGGCTGCGCTCTTGCTGAGGTGACTTTAGTGTGGGACTAGGAGTTGGTGTCCGCGGCCCTCCGGAGACCTGAACTGGCCCCTCACGTTTTGCTGATAACTCTTTATCCTGTGCCTGGGCAGGGAAAGGACCCATGGGTGTGGAGGCCAAGCGCTCGGGGATCCTAGAGACCCCTTTTCCCATCCCCCGCAGCCGCTCCCGTGCGTTCCATAGGGCTTCGGGGTCGCTGATTTCGTATCGAGGGGCGCTCGGCTCTTGCCCCTTCTGTTTTCCCCACCTCGTCTAGTACTTCTAACGCAAATTGCTCTTGGGCTTGCATCCAGAGCGGAGCTCTGAGAAAATAACTTAAAGACATGTTGGTCGTCATTGCCTCCGAGCCCACTTTAGCCCTCAGCTCTGTATCAGAAATGCTGTTCCTTTGGGAACCACAGCCAAAGAAGAGATGGAGCGGTTCTGGAATAAGAATATAAGTTCAAACCGTCCTGTATCTCCCCACATCACTATCTACAGTTGGTCTCTTCCCATGGCGATGTCCATCTGCCACCGTGGCACTGGTATTGCTTTGAGTGCAGGGGTCTCTCTTTTTGGCATGTCGGCCCTGTTACTCCCTGGGAACTTTGAGTCTTATTTGGAACTCGTGAAGTCCCTGTGTCTGGGGCCAGCACTGATCCACACAGCTAAGTTTGCACTCGTCTTCCCTCTCATGTATCATACCTGGAATGGGATCCGACACTTGATGTGGGACCTAGGAAAAGGCCTGAAGATTCCCCAGCTATACCAGTCTGGAGTGGTTGTCCTGGTTCTTACTGTGTTGTCCTCTATGGGGCTGGCAGCCATGTGAAGAACGGAGGTTCCCAGCATCATCTTCCTACACCTTATTACATTCATCCATCTTTCTGTTTTTCATTCTTATCTCCAGCCTGGGAAAAGTTCTCCTTATTTGTTTAGGTCCTTTTGTACTTTCAGATCCCGTTGGAGCAGTAGAGTACCTTGTAGACCATAATAGTGGAAAAGGGTCTAGTTTTCCCCTTGTTTCTAAAGATGGGGTGGCTGCAAAAACTCCCCTTTTTTGCCCACAGCTTGCCAACTCTAGAAGCAGTTATTCTGTCTGCATATTGGGCTTTGATTTGTGCTGAGGGTCAGCTTTTGGCTCCTTCTTCCTGAGACAGTGGAAACAATGCCAGCTCTGTGGCTTCTGCCCTGGGGACTGGGGGTGAGGCTTTGGGTGCCACTGCCTGTGGGTTGCTGGCTTAAAGGACAATTCTGTTCATTGGTGAGAGCCCAGGCCATTAACACCTACGCAGTGTTATTGAAAGAAGAGAGGTGGGGGTGGAGGGGAATTAGTCTGTCCCAGTTAGAGGGAGATAAAGAGGGCTAGTTAGTTCTTGGAGCAGCTGCTTTTGAGGAGAAAATATATAGCTTTTGACACAAGAAGATCCAGAAAATTATTGAACATATTAATGGTTATTTCTTTTTCTTTTTCTTGGATTTCCAGAAAAGCCTCTTAGTTTTATGCTTTCTCATCAAAGTCATGTACCCTTTTTTTCTGAAACTGAATTAAAATACTTATTT

Publications

PMID - Link Title