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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name UBE2D3P6
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_8) and its respective parental gene (in scaffold_m19_p_1). Each line represents a retrocopy.
Species Myotis myotis
Coordinates scaffold_m19_p_8:40754673-40754886  UCSC
Strand +
Parental Sequence UBE2D3_x2
Parental seq. overlap 188 bp
Parental seq. overlap (%) 42.1%
Genomic Region Intragenic (LOC04930)
Retrocopy Summary UBE2D3P6, located on scaffold_m19_p_8:40754673-40754886, is a retrocopy of the parental gene UBE2D3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UBE2D3
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_1:71820582-71847598
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa UBE2D3P7
Cow Bos taurus UBE2D3P2
Dolphin Tursiops truncatus UBE2D3P6
Dog Canis familiaris UBE2D3P8
Panda Ailuropoda melanoleuca UBE2D3P2
Cat Felis catus UBE2D3P3
Velvety free-tailed bat Molossus molossus UBE2D3P8
Kuhl's pipistrelle Pipistrellus kuhlii UBE2D3P2
Greater horseshoe bat Rhinolophus ferrumequinum UBE2D3P2
Egyptian rousette Rousettus aegyptiacus UBE2D3P2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>UBE2D3P6
TACAATTATGGGACCTAGTGAGAGTCTATAAAAAGGCGGGGTATTCTTTTTCACAATTCATTGTTCTACAGACTACCCCTTCAAATTGCCCAAGGTTGCATTTACAACAAGAATTTATTATTCAAATAATAACATTAATGGCAGCATTTGTCTTGATATTCTACTATCACAGTGGTCTCCTGATTTAACTATTTCTAAAGTTATTTTATCCATT
>UBE2D3_x2
ATGGCGCTGAAACGGATTAATAAGGAACTTAGTGATTTGGCCCGTGACCCTCCAGCACAGTGTTCTGCAGGTCCAGTTGGGGATGATAtgtttCATTGGCAAGCCACAATTATGGGACCTAATGACAGCCCATATCAAGGTGGTGTATTCTTTTTGACAATTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTCGATATTCTAAGATCACAGTGGTCTCCTGCATTAACTATTTCTAAAGTTCTTTTATCCATTTGTTCACTGCTATGTGATCCAAACCCAGATGACCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAGACAGAGATAAGTACAATAGGTTAGCAAGAGAGTGGACAGAGAAATACGCTATGTTGTAG

Publications

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