Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TRAM1P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr5:115429141-115429848  UCSC
Strand -
Parental Sequence NM_001266375.1
Parental seq. overlap 595 bp
Parental seq. overlap (%) 21.7%
Genomic Region Intergenic
Retrocopy Summary TRAM1P1, located on chr5:115429141-115429848, is a retrocopy of the parental gene TRAM1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TRAM1
Full Name translocation associated membrane protein 1
Also known as -
Coordinate chr8:71163675-71196718
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TRAM1L1
Chimpanzee Pan troglodytes TRAM1P1
Bonobo Pan paniscus TRAM1P1
Gorilla Gorilla gorilla TRAM1P1
Orangutan Pongo abelii TRAM1P1
Gibbon Nomascus leucogenys TRAM1P1
Green monkey Chlorocebus sabaeus TRAM1P1
Crab-eating macaque Macaca fascicularis TRAM1P1
Baboon Papio anubis TRAM1P1
Golden snub-nosed monkey Rhinopithecus roxellana TRAM1P1
Marmoset Callithrix jacchus TRAM1P1
Rabbit Oryctolagus cuniculus TRAM1P1
Pig Sus scrofa TRAM1P1
Dolphin Tursiops truncatus TRAM1P1
Horse Equus caballus TRAM1P1
Panda Ailuropoda melanoleuca TRAM1P1
Cat Felis catus TRAM1P1
Sloth Choloepus didactylus TRAM1P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TRAM1P1
GTCCCTCTATTATTATGGTGTCAAAGATTTGGCCACGGTTTTCTTCTACATGCTGGTGGCAATCATTATTCATGCCACAATTCAGGAATATGTGTTGGATAAAATTAACAAGAGAATGCAGTTCACCAAAGCGAAACAAAACAAGTTTAATGAATCTGGTCAGTTTAGTGTGTTCTACTTTTTTTCTTGTATTTGGGGCACATTCATTTTAATTTCTGAAAACTGCCTGTCAGACCCAACTCTCATATGGAGGGCTCATCCCCATTGCATGATGACATTTCAAATGAAGTTTTTCTACATATCCCAGTTGGCTTACTGGTTTCATGCTCTTCCTGAACTCTACTTCCAGAAAATCAGAAAACAGGACATCCCTCGTCAACTTGTCTACATTGGTCTTCACCTCTTTCACATTACTGGAGCTTATCTGTTGTACTTGAATCATTTGGGACTTCTTCTTTTGGTACTGCATTATTTTGTTGAATTACTTTCCCACATGTGCGGCCTGTTTTACTTTAGTGATGAAAAGTACCAGAAAGGCATATCTCTGTGGGCCATTGTGTTTATCTTGGGTAGACTTATGACTTTAATTGTTTCCGTACTCACGGTTGGGTTTCACCTGGCTGGATCGCAGAATCAGAATCCTGATGCCATTACTGGAAATGTAAATGTGTTGGCAGCTAAAATTGCTGTTCTGTCGTCCAGTTGCAC
>NM_001266375.1
CCGGGCGGCCCGGCGGCTGCGTACTGGCTGTGGGATGGGAAGTGAAGCCCCAgcgagcggctgcagcggggccgtgaggagcagccagggggaggcggcggcggcggcgAGTCGGTGAGCAGCTGGGAAGAGCAGAGCCGGGGTGGAGCACCTGCAGGCGCGGGCGGCGGCCCCACCATGGCGATTCGCAAGAAGAGCACCAAGAGCCCCCCGGTGCTGAGCCACGAATTCGTCCTGCAGAATCACGCGGACATCGTCTCCTGTGTGGCGATGGTCTTCCTGCTGGGGCTCATGTTTGAGATAACGGCAAAAGCTTCTATCATTTTCGTTACTCTTCAGTACAATGTCACCCTCCCCGCAACAGAAGAACAAGCTACTGAATCAGCGTCCCTTTATTACTATGGTATCAAAGATTTGGCTACAGTTTTCTTCTACATGCTAGTGGCAATAATTATTCATGCTGTTATTCAAGAGTATATGTTGGATAAAATTAACAGGCGAATGCACTTCTCCAAAACGAAACACAGCAAGTTTAATGAATCTGGTCAGCTTAGTGCATTCTACCTTTTTGCCTGTGTTTGGGGCACATTCATTCTAATCTCTGAAAACTACATCTCAGACCCAACTATCTTATGGAGGGCTTATCCCCATAACCTGATGACGTTTCAAATGAAGTTTTTCTACATATCACAGCTGGCTTACTGGCTTCATGCTTTTCCTGAACTCTACTTCCAGAAAACCAAAAAAGAGGATATTCCTCGTCAGCTTGTCTACATTGGTCTTTACCTCTTCCACATTGCTGGAGCTTACCTTTTGAACTTGAATCATCTAGGACTTGTTCTTCTGGTGCTACATTATTTTGTTGAATTTCTTTTCCACATTTCTCGCCTGTTTTATTTTAGCAATGAAAAGTATCAGAAAGGATTTTCTCTGTGGGCAGTTCTTTTTGTTTTTGGAAGACTTCTGACTTTAATTCTTTCAGTACTGACTGTTGGTTTTGGCCTTGCAAGAGCAGAGAATCAGAAGCTGGATTTCAGTACTGGAAACTTCAATGTGTTGGCTGTTAGAATTGCTGTTCTGGCATCCATTTGCATTACTCAAGCATTCATGATGTGGAAGTTCATTAATTTTCAGCTTCGGAGGTGGAGGGAACATTCTGCTTTTCAGGCACCAGCTGTGAAGAAGAAACCAACAGTAACTAAAGGCAGATCTTCTAAAAAAGGAACAGAAAATGGTGTAAATGGAACATTAACTTCAAATGTAGCAGACTCTCCCCGGAATAGAAAAGAAAAATCTTCATAATGAATTATAAACTAATTGATTAATGTCCCCAAAGAAATCTGCTTTCTACTATATCTTTCAGCATTAGAGATTTTTCTGTTCTTGAAAATACAGTCTGTGCTCTTTGATTTTTGCTGTTGTACTGTTTCATGCATTTTTTTAATGGGCATTTGAGGGGAGGATTATTGCTATGAATGAAAAAAATATTTTAGCTTAGACTAAGCTACCTGCCTTCAAAATAGTTTAGGGACCACCACCATATTTTATTTTGTTTTTATTTTTGAACATTTTTCTAATGATTTGGAGAGAAAACTATTTACAAAAATTCCACATATCAGTGATACAATTTCTTGCTGTCACCAATTTTTTATAATAGCAGAGTGGCCTGTTCTAAGAAGGCCATATTTTTTAAGTTATCTTTCAGGGTAAAATGGAACTACTATAAAGTTGGATGTCAAACTTTAATATGTTTTCAGTGTTCTCTAATTTTTAGGAATTTTTGTAACCTTTACACCTGGAAAAAAAGATTTGTAAAATCGCCAAAACAATTGTGTGCTTCATTTTATAGGTAGTGGTTATTAGTATTACATCCCCATTTTAAAAACAAAAACATAATGGTTACAACATGTGGAGTTTTATTGACATACATATTAAATCAAAGTATATTCTTAAAAGTGCTTGTGAAGTAAAATCTTTCTTGTGCATTTTCAATACTTGTAACCTGGAAATCAGAAAATATTTACTATGAACAGGAAAATCGGACTTATATAGCCCTTTTTGATATGTTTATTAATAATGATTCTTAATGGGGCTCATAATAAGTTTAATATGCACAGCATCTTAGAAAAGTTTAACCTGCAAACCCTTTTAAAACATAATGCCTACTTGATTTATATCTATAAAAAGAATGTCAGGTAATTATATTTGGAAAACATTTAATGCACTAACTTTAAAGAAATTGAAAATTCAGGTGGATAAATAGTCTTACAAAAGACAATGTGCTTTATGTTATACCTATAGCTTTGGTCCCATCTTTAATTGAGAAACatttatctgtataaaacatatttttggataaatatatatatatatatttgtatCTCTACAGAAAGGCTCTAAAAAGCATTTGAGGAAAATATTTGGTTCCCTTTTCTATAATTATCCTTTAAGATCCGTATAGCTACATTTGGTTTATTCATTGTATTTGCAGTATATATATTGTTCCTTTCAGTGTTCACATCTTGTTCCCCATTTCTCACTTGTGTCACCGGCTGTTTGTGCCATTTTTAGTGTAAAAGTTGCAGACCTATTAGATCTGCAGTTTAAGTTGCCATGCTGCTAGGAAGTTGTCCTTTTTCTTTCCAGCTGTTTACCTACTTCCTGGAAAAAGTAGTAGCTCTCTGTAGCATTATGGAGTTTCAGTGGAACCAAATCTTTGCCATTAAAAACTGGCATTATACTGAAC

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