Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name UBE2NP3
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr7:83508171-83508824  UCSC
Strand -
Parental Sequence XM_028829000.1
Parental seq. overlap 615 bp
Parental seq. overlap (%) 22.9%
Genomic Region Intergenic
Retrocopy Summary UBE2NP3, located on chr7:83508171-83508824, is a retrocopy of the parental gene UBE2N. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UBE2N
Full Name ubiquitin conjugating enzyme E2 N
Also known as -
Coordinate chr11:93212041-93245642
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBE2NP1
Chimpanzee Pan troglodytes UBE2NP2
Bonobo Pan paniscus UBE2NP3
Gorilla Gorilla gorilla UBE2NP3
Orangutan Pongo abelii UBE2NP3
Gibbon Nomascus leucogenys UBE2NP3
Crab-eating macaque Macaca fascicularis UBE2NP2
Baboon Papio anubis UBE2NP3
Golden snub-nosed monkey Rhinopithecus roxellana UBE2NP4
Green monkey Chlorocebus sabaeus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>UBE2NP3
GGACTTCCACTCGTGCCTGATGGGAGGGAGCCGGAGACCAGAGGTCGAAATCGGGTTCTGACAAGATGGCTGGGCTTCCCCGCACAATCATCAAGGAAACCCAGCGTTTGCTGGGAGAATGAGTTCCCGGCATCCAAGCAGAACCACATGAGAGCAACACCCATTATTTTCATGTGGTCATTGCTGGCCCTCAGGTTTCCCCCTTTGAGGGAGGGACTTTTAAACTTGAACTATTCCTTCCGACGAATACGCAATGGCAGCCCCTAAAGTATGTTTCATGACCAAACTTTATCATCCTAATATAGGCAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATCCGACAGTTCTGCTATCGATCCAGGCCTTGTTAAGTGCTCCCAATCCAGATGATCCATTAGCAAATGATGTAGCGGAACAGTGGAAGACCAACAAAGCCCAAGCCAGACTAGAGCATGGACTAGGCTATATGCCGTGATTAATATTTAAATTGATCCTATCAGCAAGTGCGCATCACTTCTCCTGTTCTACCAAGACTTCCTCCTTTTTGTTTGCATTTAATGGACACAGTCTTAGAAATGTTACAGAATAAAAAAGCCCGGACATCTTCAGCCTTAGGTGATTAAAA
>XM_028829000.1
AGAGAGCGCGCGCGCGAATCGCGCGCTACCACCGTCGCGGGCAGGCTCGGCCACGACCGCCGGAGCCCCGCGCCTCCCCGCGAGGCGTCTCCAAAGTCCCTGCCCCGCCGCGGAGCGTCACTTCCGCCATCCCCGGCCGGGGTTGGGGCGGGGCGCGCGGGGGAGGGGGCCAGGTCGGAGGGAAGCCCGCCCGTGCCCGAGCCCGCGCCTGAGCAGGGACTACATTTCCCGAGGGGCCTAggcggcggctgcggcgacgggcgcggcAACGTCCCCCGGAAGTGGAGCCTGGGACTTCCACTCGTGCGTGAGGCGAGCGGAGCCGGAGACGAGACCAGAGGCCGAACTCGGGTTCTGACAAGATGGCCGGGCTGCCCCGCAGGATCATCAAGGAAACCCAGCGTTTGCTGGCAGAACCAGTTCCTGGCATCAAAGCAGAACCAGATGAGAGCAACGCCCGTTATTTTCATGTGGTCATTGCTGGCCCTCAAGATTCCCCCTTTGAGGGAGGGACTTTTAAACTTGAACTATTCCTTCCTGAAGAATACCCAATGGCAGCCCCTAAAGTACGTTTCATGACCAAAATTTATCATCCTAATGTAGACAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGGTAAGTGTTATCTTTATCAGCATATGCTATTATTAAGCTTTCTCCTTTTTCTCTTAAGCATTCCATGTTTAGAATGTAAATATACAAAGACCAGAGAGGTCTGCGGGAGGGAAGTGAAGCAGTTCTGGGCCTGTTTTTTCATGCTTCATCATACTGGGCCTGTTGCCTTCATAGATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATCGATCCAGGCCTTGTTAAGTGCTCCCAATCCAGATGATCCATTAGCAAATGATGTAGCGGAGCAGTGGAAGACCAACGAAGCCCAAGCCATAGAAACAGCTAGAGCATGGACTAGGCTATATGCCATGAATAATATTTAAATTGATCCGATCATCAAGTGTGCATCACTTCTCCTGTTCTGCCAAGACTTCCTCCTTTTTGTTTGCATTTAATGGACACAGTCTTAGAAACATTACAGAATAAAAAAGCCCAGACATCTTCAGTCCTTTGGTGATTAAATGCACATTAGCAAATCTATGTCTTGTCCTGATTCACTGTCATAAAGCATGAACAGAGGCTAGAAGTATCATCTGGATTGTTGTGAAACGTTTAAAAGCAGTGGCCCCTCCCTGCTTTTATTCATTTCCCCCATCCTGGTTTAAGTATAAAGCACTGTGAATGAAGGTAGTTGTCAGGTTAGCTGCAGGGGTGTGGGTGtttttctttattttattttattttttttGAGGGGGGAGGTAGTTTTATTTTTAATTTTATGGGCCCCTTTCCCCCTTTTTTGGTGATCTAATTGCATTGGTTAAAAGCAGCTAACCAGGTCTTTAAAATATGCTCTCTAGCCAAGTCTAACTTTATTTAGACGCTGTAGATGGACAAGCTTGATTGTTTGAACCAAAATGGGAACATTAAACAAACATCACAGCCCTCACTAATAACATTGCTGTCAAGTGTAGATTCCCCCCTTCAAAAAAAGCTTGTGACCATTTTGTATGGCTTGTCTGGAAACTTCTGTAAATCTTATGTTTTAGTAAAATATTTTTTGTTATTCTACTTTGCCTTTGTACAGTTTATTTTACTGTGTTTATTTCATTTTCCCAATGTGACAATCGTATTTTAAAATTAAAACTATGGAACATTCTGTCTTGGTCTTCACCATCTGGCAAATTGAATGGCAAGAGGTGGATTTCACCAGTTTCTTTTCACTGATGCAGATTTGTGTTAAGATAGTACTGAATGGAGTATTTATAAACTGGCCCTGAGCATGCATAAAGCATCAGTATCTGACCTTTTTTTAACCTCCTAGGAATTTGAAATAAATGTGTTTGTGTTGTCCGATTAGACGATCATTGGTGTCTTGCCACAATGTTTAAAAATTACTGTACAGGAAAGTCACAGCAAAGATAGCAGTTGTGACTGACATGTAGGACTTTCACAGTTGTGCCACATTTTTGCCTAAAATTTGGGTTATGACCTTTTTCTTGGTTCTTGTCTGAAAATTTCATCTGTAACCTTTCATGTGTGTTATTAAGAAACACTGATCTGATAATCATTTGGGATTTGCTGAGGCATTTGTGAGTCTTCCTTATAAACCTGATGAGCAGATCTCAAGCATCCAACTTGTGTGTCATCAGAAAGGTTTATTCCTTTGAGAGTAGCAAGTCCTCAATTAATGATTCTTGCTTTCATCCCTCTAGTATTTGCTATGGGAGCTCCTTTTATTCTTTAATTTGGAATTCAGTAATTTTTCTTCTTTATTGACAGAATTCCTCCCCTCACAAAACTGTTCTTTCCCACTTCTCTCCATATCTAATTCCTGATTCTTGTAATTTTTAAGTCATAAATGTAGCCAGTCATAAATACATAAATGTTAACCTTGGGTTGGAACCTTGTCTCTTGCAGTTTAAGGTAATGGATATTGTAGCCCATCTGAATTTTCTTCACTCTTTTTCTCGTAATTCTGGAGTTTCTTCAGATTGTGGTGTATTTTATTGTGCTCCTATGTAAGATGAAGAATTAACTATTAAAATTACATTTTCAACATACAAAA

Publications

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