Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GTF3AP1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chr8:14968241-14968427  UCSC
Strand -
Parental Sequence XM_012744032.1
Parental seq. overlap 156 bp
Parental seq. overlap (%) 11.1%
Genomic Region Intragenic (WDFY1)
Retrocopy Summary GTF3AP1, located on chr8:14968241-14968427, is a retrocopy of the parental gene GTF3A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GTF3A
Full Name N/A
Also known as -
Coordinate chr13:77979092-77993851
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens GTF3AP7
Chimpanzee Pan troglodytes GTF3AP1
Bonobo Pan paniscus GTF3AP1
Gorilla Gorilla gorilla GTF3AP1
Orangutan Pongo abelii GTF3AP1
Gibbon Nomascus leucogenys GTF3AP3
Green monkey Chlorocebus sabaeus GTF3AP1
Golden snub-nosed monkey Rhinopithecus roxellana GTF3AP2
Marmoset Callithrix jacchus GTF3AP2
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GTF3AP1
TGCAATGAAACATAGTCTCACTAGCCCGGTTGCGCATGAAActaacaagaagaaaatgaagctcCAAGTAAAAGCATCTTGTGAAAAAAGGAAGTTTGGCCTCTTGGCTCAGTGGGTATGTCTCTCTTCAAAGGAAACCAAAAGAGCAGGCTTATCTCTGCCTAAAACAGAGAGTTGCTGAACTGTA
>XM_012744032.1
ATGGTACCACGTCTAAATGCTGTCCACCAGACGATTCCGGATGAGGAGGCGGCAGATGAGGAGTGGGGCGGGGCCTGGTGCCCGGGTGCCCGCGCTCCAGGAAGCGCGCCCGGAGCGGTGGGCCGCGCGCGCAAAGTCGCTGCACGTGGCTCGGCACGTGACTCCGCGCCTGGCCCGGGGCGCGGAGGCCGCACCCTGGAGCCGCCGGGCTCGGTCGCCGAGGCGGTGTCGTCCCTGACCATCGCCGACGCGTTCGTCGAGGCCGGCGAGAGCCCgggcccgcccccgccgccccccgcgCCGCCCCGGAGGTTCATCTGCTCCTTCCCCGACTGCAGCGCCAGTTACAACAAGGCCTGGAAGCTTGACGCGCACCTGTGCAAGCACACGGGGGAGAGACCATTTGTTTGTGACCATGAAGGCTGTGGCAAAGCCTTTGTCAGGGACTATCATCTGAGTCGCCATATCCTGAGTCATACTGGAGAAAAGCCATTTGTTTGTGCAGCTGTTGGCTGTGACCAAAAATTCAACACAAAATCAAACTTGAAGAAACATTTTGAACGCAAacatgaaaatcagcaaaaacaTTATGTATGCAATTTTGAAGGTTGTCAGAAGACCTTTAAGAAACATCAGCAGCTGAAAACCCATCAGTGCCAGCATACCAACGAACCACTATTCAAGTGTACCCAGGAAGGATGTGGGAAGCACTTTGCCACACCCAGCAAGCTGAAACGACACAGCAAGATCCACGAGGgctaTATTTGTCAAAAAGGATGTTCCTTTGTGGCAAAAACATGGACAGAACTTCTGAAACATGTGAGAGAAACCCATAGAGAGGAGATAACATGTGAAGTATGCCAGAAGACATTTAAACACAAAGATCACCTTAAGCAACACATGAAAGCTCATGCCCCAGAAAGGGATGTATACCGATGTCCACGAGACGGCTGTGGAAGAACCTACACGACTGTGTTTAATCTCCAGAGCCATGTCCTCTCTTTTCACGAGGAAAGGCGTCCTTTTGTGTGTGAACACGCTGGCTGTGGCAAAACGTTTGCAATGAAAcAAAGTCTCAGTAGGCATGCTGTTGTGCATGATCCtgacaagaagaaaatgaagctcaAAGTAAAAAAGTCTCGTGAAAAACGAAGTTTGGCCTCTCGTCTCAGTGGATATATCCCTcctaaaaggaaacaagaaaagcaAGGCTTATCTTTGTCAAAAAATGGAGAGTTACTGAACTGTGTGAAAGACCAGGTGCTCACCACAGTTGCAATACTTACCCGTAACTAAATATCAGTTGCGTTGTTTGGAGGACCACAGACCAATGAGCTCAGCTATTTTCTCTCAgaagtgtatttttctttattaaaatcatAGTTGTAGAACATCTGAA

Publications

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