Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HMGN2P20
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr6:26616100-26616472  UCSC
Strand +
Parental Sequence NM_001132303.1
Parental seq. overlap 319 bp
Parental seq. overlap (%) 26.3%
Genomic Region Intergenic
Retrocopy Summary HMGN2P20, located on chr6:26616100-26616472, is a retrocopy of the parental gene HMGN2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HMGN2
Full Name N/A
Also known as HMG17
Coordinate chr1:201621522-201624998
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HMGN2P52
Chimpanzee Pan troglodytes HMGN2P19
Bonobo Pan paniscus LOC100986166P3
Gorilla Gorilla gorilla HMGN2P21
Gibbon Nomascus leucogenys HMGN2P13
Green monkey Chlorocebus sabaeus HMGN2P37
Crab-eating macaque Macaca fascicularis HMGN2P10
Rhesus Macaca mulatta HMGN2P14
Baboon Papio anubis HMGN2P19
Marmoset Callithrix jacchus HMGN2P13
Mouse lemur Microcebus murinus HMGN2P11
Cow Bos taurus HMGN2P6
Sheep Ovis aries HMGN2P8
Dolphin Tursiops truncatus HMGN2P4
Horse Equus caballus HMGN2P5
Dog Canis familiaris HMGN2P42
Sloth Choloepus didactylus HMGN2P26
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HMGN2P20
TGCCACCATGCCCAAGAGAAAGGCAAAAGGAGATGCTAAAGGTGATAAAGCAAAGGTGAAGGATGAGCCACAAAGGAGATCAGCACGGTTGTCTGCTAAACCAGCTCCTCCAAAACCAGAGCCCAGGCCTAAAAAGGCCTCAGCAAAGAAGGGAGAGAAGCTTCCCAAAGGGAGAAAGGGGAAAGCAGATGCTGGCAAGGATGGGAACAACCCTGCAAAAAACCGAGATGCCTCTACACTCCAGTCCCAGAAAGCAGAAGGCTCTGGGGATGCCAAGTGAAATGTACATTTTTGATAGCTGTGTACTTACAGTGACTCTACTGTTTGAAATACTATTTTTTTAAATCAAGTTTTATAAAACTGTAGAATTTTG
>NM_001132303.1
GAGCAGTGTGAAGAAGAAGAGGCAAGAACGACCCCCGGACCGACCAAAGCCCGCGCGCCGCTGCATCCCGCGTCCAGCACCTACGTCccgccgccgtcgccgccgccaccATGCCCAAGAGAAAGGCTGAAGGGGATGCTAAGGGAGATAAAGCCAAGGTGAAAGACGAACCACAGAGAAGATCCGCGAGGTTGTCTGCTAAACCTGCTCCTCCAAAGCCAGAGCCCAAGCCTAAAAAGGCCCCTGCAAAGAAGGGAGAGAAGGTACCCAAAGGGAAAAAGGGAAAAGCTGATGCTGGCAAGGAGGGGAATAACCCTGCAGAAAATGGAGATGCCAAAACAGACCAGGCACAGAAAGCTGAAGGTGCTGGAGATGCCAAGTGAAGTGTGTGCATTTTTGATAACTGTGTACTTCTGGTGACTGTACAGTTTGAAATACTATTTTTTATCAAGTTTTATAAAAATGCAGAAttttgttttactttttttttttttttAAAGCTATGTTGTTAGCACACAGAACACTTCATTGTTGTTTTTGGGGGAAGGGGGGCATATGTCACTAATAGAATGTCTCCAAAGCTGGATTGATGTGGAGAAAACACCTTTCCCTTCTAGTTTTGAGAGACTTCCTCTTGGCTCCCAGGAGGAGGGATTCCCTGACTTTGACACACATGGCCACCTTGGCACAAAAGCCTTGTGGTATGGAAAAACAAATTTGTTTTTATGTCCTCTTCTCCCTTTCCATCTTTCAGCATAGACTTAACTCCCTTAAGCCCAGACATCTGTTGGGACCTGACCCCTAGTCATTGGTTACCAGTGTGTCAGGCAATCTGGACTTTCCAGTGATGCCACTGAGATGGCACCTGTCAAAAGAGCAGTGGTTCCATTTCTAGATTGTGGATCTTCAGATAAATTCTGCCATTTTCATTTCACTTCCTGAAAGTCAGGGTCGGCTTGTGAAAAGTTGTTAAACAACATGCTAAATGTGAAATGTCAACCCTCACTCTAAACTTTCCCTGTTCAGAGCATCAGATGAAGACTTCATTGGGTTTTATAGTGGCTTTCTGATTTTTGGTAGTCCATTGAAGAAGGGAGTTTGAAAGTTGTTGTATACTGTTAACGATTGTCTGCCCATGTCCTGCCTGAAATACCATGATTGTTTATGGAAAGTATCTTTAATAAAGCTGGATACAGTTTGGCTTGGAA

Publications

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