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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC105855163P1
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in NW_017965411). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chr9:56118150-56118388  UCSC
Strand -
Parental Sequence XM_012735966.1
Parental seq. overlap 196 bp
Parental seq. overlap (%) 49.7%
Genomic Region Intragenic (ZFPM2)
Retrocopy Summary LOC105855163P1, located on chr9:56118150-56118388, is a retrocopy of the parental gene LOC105855163. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC105855163
Full Name N/A
Also known as -
Coordinate NW_017965411:247-1586
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL12P24
Chimpanzee Pan troglodytes RPL12P17
Bonobo Pan paniscus RPL12P16
Gorilla Gorilla gorilla RPL12P17
Gibbon Nomascus leucogenys RPL12P36
Green monkey Chlorocebus sabaeus RPL12P10
Crab-eating macaque Macaca fascicularis RPL12P22
Rhesus Macaca mulatta RPL12P23
Baboon Papio anubis RPL12P24
Golden snub-nosed monkey Rhinopithecus roxellana RPL12P21
Dolphin Tursiops truncatus RPL12P20
Horse Equus caballus RPL12P8
Orangutan Pongo abelii Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC105855163P1
CCTCTGCCCTGATCAGAAAAGCCCACAAGAAATCACCCAGAGACagaaaaaatcagtaaaatattaatCACAGTGAAAACAGTACTTTTAATAAGATTGTCAACATTGCCTGACAGATGCTGCCCCCACCATTAGGCAGGGAACTCTCTGGATCATTAGAGAGATCCTGGAGATTGCCCAGTCTGAGGGCTGCAATGCTGATGGCTGCCACCTTCAGGACATCATTGATGACATCAACT
>XM_012735966.1
ACATGCGCAGTAAGGCCAGTGTCTGGCCCATGGTCTCAGAGAGCTGATGTGCATGGCAGTATTGATTCTCATACAGTGGTGGTATCATTCACTGGAGGTGGGATAGCTTATTCACATCAAGAATCTCTTCTGCAGATTGAAGTGGtaccttctgcctctgccctgaTCATCAAAGCCCTCAAGGAACCaccaagagacagaaagaagcagaaaaacattAAACACAACGGAAATATCACTTTTGATGAGATTGTCAATATTGCCAGACAGATGCGGCACCGATCTTTAGCCAGAGAACTTTCTGGAACCATTAAAGAGATTCTGGGCACTGCCCAGTCTGTGGGCTGCAATGTTGATGGCCGCCACCCACATGACATCATAGATGACATCAACA

Publications

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