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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC105863290P2
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in NW_017968531). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chr8:159769602-159769989  UCSC
Strand +
Parental Sequence XM_020285367.1
Parental seq. overlap 315 bp
Parental seq. overlap (%) 20.7%
Genomic Region Intergenic
Retrocopy Summary LOC105863290P2, located on chr8:159769602-159769989, is a retrocopy of the parental gene LOC105863290. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC105863290
Full Name N/A
Also known as -
Coordinate NW_017968531:126993-142659
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF723P5
Bonobo Pan paniscus LOC100986753P5
Orangutan Pongo abelii LOC100451404P9
Green monkey Chlorocebus sabaeus LOC103234268P3
Crab-eating macaque Macaca fascicularis ZNF195P1
Rhesus Macaca mulatta ZNF195P3
Baboon Papio anubis LOC101000404P5
Golden snub-nosed monkey Rhinopithecus roxellana LOC104671910P1
Cow Bos taurus LOC112442207P3
Panda Ailuropoda melanoleuca SUMO2P10
Chimpanzee Pan troglodytes Without Homology
Gorilla Gorilla gorilla Without Homology
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC105863290P2
CCCATACTGGAGAgcaaccctacaaatgtgaagaatgtgacaAAGCCTTTAAGAAGTCCTCACAACTTACTGCACATAGGAGAATTCATTCTGGAGAGAAATCCTACTAATGTGAAGAATGTGACAAAGCCTTTAAGCAGTCCTCACTACTTAAACTGCACATAGGAGAATTCATTCTGGAGAGAAACgatacaaatgtgaagaatgtagcCCAGCCTTTAACCGGTCCTTACACCTTAAAtgacataagagaattcatacaggagagaaattATACAAATGTGAAGAACGTGGCAAAGCCTTTAGGCATTCCTCAAATCTTAGAAGACATAGGTAATTCATACTAGAGATACACTGTACAAATGTTAAGAATCTGGCAAAGCTTTTA
>XM_020285367.1
ATGGTGACATTCAGGGATGTGGCTGTAGAATTCTCTCCAGAGGAGTGGGCATGCCTTGACAATGCTCAGCAGAATTTGTATAGGGATGTGATGTTAGAGAACTACAGAAACCTGGTCTCCCTTGgtCTTGTTGTCTCAAAACCAGAGCTGATCACATGTCTGGAGCAAAGCATAGAGCCCTGGattatgaagaaagaggaaacaacaGCCAAATATCCAGaACTCTCTTCCCATTGCAACAAAGACCTGTTGCCTGAGCAGGGTATAAAAGACCCCTTTCAGAAATCAATAATGAGATTATATGGAAGAAATGGCCTTGAAAATATACACTTAAGAAGAGACTGGGAGTGTGTGGGTGAGTATAAGAGGCAGAAAGCATGTTATGATGGTCTTACCCAATGTTTGTCAACTTGCCACAGAAAATTATTCAAatgttataaatgtataaatgtctTTAGCAAATCATCAAATCTAAATAGACACAAGNNNNtccatactggagagaaaccctacaaatgtaaagaatgtggcaaagcttttacCCGCTGCACACACCTTACTcgacataaaagaattcatactggagagaaaccctacaaatgtgaaatatgtggcaaagcctttaaccaGTCCTCAGTCCTTACTTGACATAaaagaatccatactggagaaaaaccctacaaatgtgaagaatgtggcaaggCCTTTAGCCTGTGCACAAACCTTACTCGACATAAAacaatccatactggagagaaacCCTACAAgtgtgaagaatgtggaaaacCCTTTAACTGTTGCTCAAAACTTATTATACATaggagaattcacactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttacccagtGCATacaccttactcaacataaaagaatccatactggagagaaaccctacaaatgtgaagaatgtgacaAAGCCTTTAACCAGTTCTCAATCCTTAgtcaacataaaagaattcatactggcgagaaaccctacaaatgtgaagaatgtggcaaagcctttaactgGTCCTCAACCCTTActctacataaaagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttaatcAGTCCTCAATCCTTACTCGacataaaaaaattcatactggagagaaaccctacaaatgtgaagaatgtgacaAAGCCTTTGCTGAGTCCTCAacccttactcaacataaaagaatccatactggagagaaacattacaaatgtgaagaatgtggcaaagcctttactcAGTGTTCAggccttactcaacataaaagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttaaccgGTCCTCAatccttactcaacataaaataattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttacccagtGGTCAagccttactcaacataaaagaattcatactggaggtAAACCCTAA

Publications

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